Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0962 ATGAGGCCTGTTTTCTGTGGAAACCTGGATTTCGACGCGCGTCAATCTGATGTGGAGAGGCTCTTTAGAAGATATGGGAAAGTCGACAGAGTCGACATGAAATCTGGGTTTGCTTTCGTTTACATGGAAGATGAACGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCGCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGATCGGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAAGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCTAGGACAAGGGATCTGGAGAGACATTTTGACTCTTATGGGAAAATATTAAATATAAGGATCAGGAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACTGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCACGACTCTCCTGATGGTAGATATGGTCGTGGTAGATCGCCTAGATCGCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCATCTTCCCGACCAGAAACAAGAGGAAGCCCCAAGTATGAACGACCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCTCCCAGAGATAGGTCACGTTCTTGA 768 0.4453 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGDSRKSSSNSKPSKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPRSPSPYRRGRGSPDYGHGSNPSSRPETRGSPKYERPESPINGRYDSRSPPPRDRSRS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0962 255 MobiDBLite consensus disorder prediction 226 255 - -
Pvu10g0962 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pvu10g0962 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Pvu10g0962 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Pvu10g0962 255 MobiDBLite consensus disorder prediction 72 86 - -
Pvu10g0962 255 Gene3D - 1 85 IPR012677 -
Pvu10g0962 255 MobiDBLite consensus disorder prediction 170 193 - -
Pvu10g0962 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Pvu10g0962 255 Gene3D - 86 230 IPR012677 -
Pvu10g0962 255 MobiDBLite consensus disorder prediction 170 255 - -
Pvu10g0962 255 MobiDBLite consensus disorder prediction 72 94 - -
Pvu10g0962 255 SMART rrm1_1 97 163 IPR000504 GO:0003723
Pvu10g0962 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pvu10g0962 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 206 - -
Pvu10g0962 255 PANTHER - 4 206 - -
Pvu10g0962 255 SUPERFAMILY RNA-binding domain, RBD 2 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0962 Pvu-Chr10 33957859 33961157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0962 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 8.18e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0962 K12893 - gmx:100797778 393.66