Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0961 ATGATTACTTGCTCCAAAGTAAGGGAAAGAAAGCCTCGTGGGGCATCTTTAGCTTTGGTGACACCAATTCAATTTTACTTCACCACCACTTTGTCCAAATTTGAAATCATGGTGGAAGCCAGTAAAGATGCAGTAGCAGTTGATGCTTGTTCAAGAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAAGGCAAGAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCTTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTGAAGAAGCCACAGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTAATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCATTGACCGTGTTAGGTTTTATGGCAGAATCAGATATTGCAAAACACAACAATATAAGAGAACTACTAGCGCGGCTTCAGATTGGTCACATGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGAAACCTCTCCAAGGATAAGAGAGAAGACAGTTACTGTTATATGCTCTCTTGTGGAATCGGGGAGCTGTGAGAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGCCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTGGGACATGGTGGTGTTCGGCCATTGATTGAGCTTTGTCAAAGTGGCGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATATATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAGGGTATTGTAAGCGTTATGATCAATCTTCTTAATTGTGGACTTTTGTTAGGTTCAAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTGACTTCAAGCAACGAGCATTTGAGAAAGTCTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGGTTCATGTTCTCAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCCACTTGTGTGATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGCTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAGCAAATAGTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTCCAGTTGCTTGATCCAAGTCCTCAGAACAGTGCCAAAAAGTATGCAGTTTCATGCCTTGGATCACTTTCCCCATGTAAGAAGTGTAAGAAACTAATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTATAGAGATGGAGATTCCAGGAGCTAAAAAGCTACTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1791 0.435 MITCSKVRERKPRGASLALVTPIQFYFTTTLSKFEIMVEASKDAVAVDACSREDWLLHAQELVPVALAKAREVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLEEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGFMAESDIAKHNNIRELLARLQIGHMEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTETSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAASKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLNCGLLLGSKEYAAECLQNLTSSNEHLRKSVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKSGSLGAQQAATCVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKANSAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0961 596 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Pvu10g0961 596 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 37 596 - -
Pvu10g0961 596 SUPERFAMILY ARM repeat 192 575 IPR016024 -
Pvu10g0961 596 Gene3D - 371 584 IPR011989 -
Pvu10g0961 596 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 37 596 - -
Pvu10g0961 596 SMART arm_5 387 425 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 507 549 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 221 261 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 344 385 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 426 465 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 466 506 IPR000225 GO:0005515
Pvu10g0961 596 SMART arm_5 303 343 IPR000225 GO:0005515
Pvu10g0961 596 Gene3D - 182 370 IPR011989 -
Pvu10g0961 596 Pfam Armadillo/beta-catenin-like repeat 468 504 IPR000225 GO:0005515
Pvu10g0961 596 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0961 Pvu-Chr10 33946754 33950212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0961 242 515 U-box Gene Family AT3G54790 26.882 1.43e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0961 - - var:108346326 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0727 8 6531160 6534940 Pvu10g0961 10 33946754 33950212 PCT