Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0929 ATGGGACCCATCACGTGCAATAGTCCTACTCTGCACGGCTCCATAAAAAATGAGCGTACATTTATTTGCATCTACAAAGTCATCCACGGTAAACACAAACAGGGCCCCCACACAAACAGAACCACCTTCTCATTCTCATTTCTCAACTCCTTCCTCACTATATATACTTTTATTCTCACTACTCACTACCACTCTTATTCTAACACCACTTTCTATCTTATTCCTACAACACTTTTTTTCTTCTTCTCTTCTTCTTTTTCTTTTTGTCAACACATGGCTCATCAATCTTCTCGAGACGTTGATCTAAGGCTGGGAGAACCCAAGGGGCCCAAACTGGAACCGGAGACGGAGGAGGCTTCTGCCATACGTGTCATGCCGGTGGCTGTGCACGTGCCCTCCATCTCCATGTCCAAGGCCCTGGCCCAAGCCCAGGCCCAACCGCAGAAGCGGGCCTCCACCAAGGACCGTCACACAAAAGTCGAGGGCCGAGGCAGGAGGATCCGAATGCCCGCCACGTGTGCGGCGCGGATCTTCCAACTCACGCGAGAACTCGGCCACAAGTCTGACGGCGAAACCATCCGATGGCTCCTTGAACACGCCGAGCCCGCCATCATAGCCGCCACGGGCACCGGCACCGTCCCCGCCATCGCCATGTCCGTCAACGGCACGCTCAAGATTCCGACCACCTCTCCCTCCGACCCAGAACTCGGGGACCCGCCCGAGAGGAAGAAGCGTAAGCGACCCGCCAACAGCGCCTACGTGGACGTAAACGACGGCGCAGTTTCAGTCCCCGCGGGCCTCACGAGCTCCACTAAGCAAAACACAAAGACAACCACCACCACTACCACCACGACCACGACAATTCCGCAACACACCGCGATCCCGTTGCCGCAGGGCGTGGTCCCCGTGTGGGCCGTGCCTTCAAACGCCGTCGTTCCGACTGCAGGCGCGTTCTTCGTCGTCCCTCAAACGGCTTCCTTTCAGCAGCAGCCGCAGTTTTTTACCATAGCACGACCCATCTCCGCGTTTGTCTCCTCCATGGTCACACCCGTTCAACTCCAACCAACCTCCACATCCTCTCCCGCAAACGCTAACCCTTCCTCCACCACGCCGTCGTCGAAGTCCCCAGCCAGAGCCACCGTGATGGCTCCAACCACTACCACCACAACACACATGCTCAGAGACTTCTCGTTGGAGATTTACGACAAGCAAGAGTTGCAGTTCATGTCGCGCGCGTCTTCCAAGAATTGA 1251 0.5604 MGPITCNSPTLHGSIKNERTFICIYKVIHGKHKQGPHTNRTTFSFSFLNSFLTIYTFILTTHYHSYSNTTFYLIPTTLFFFFSSSFSFCQHMAHQSSRDVDLRLGEPKGPKLEPETEEASAIRVMPVAVHVPSISMSKALAQAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDPELGDPPERKKRKRPANSAYVDVNDGAVSVPAGLTSSTKQNTKTTTTTTTTTTTIPQHTAIPLPQGVVPVWAVPSNAVVPTAGAFFVVPQTASFQQQPQFFTIARPISAFVSSMVTPVQLQPTSTSSPANANPSSTTPSSKSPARATVMAPTTTTTTHMLRDFSLEIYDKQELQFMSRASSKN* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0929 416 MobiDBLite consensus disorder prediction 353 381 - -
Pvu10g0929 416 PANTHER TRANSCRIPTION FACTOR TCP9 109 415 - -
Pvu10g0929 416 MobiDBLite consensus disorder prediction 143 163 - -
Pvu10g0929 416 MobiDBLite consensus disorder prediction 264 284 - -
Pvu10g0929 416 Pfam TCP family transcription factor 152 268 IPR017887 -
Pvu10g0929 416 MobiDBLite consensus disorder prediction 236 251 - -
Pvu10g0929 416 ProSiteProfiles TCP domain profile. 153 207 IPR017887 -
Pvu10g0929 416 MobiDBLite consensus disorder prediction 224 251 - -
Pvu10g0929 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 109 415 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0929 Pvu-Chr10 33207374 33209510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0929 112 416 TCP Transcription Factor Family AT2G45680 53.474 1.19e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu10g0929 TCP 5.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0929 - - pvu:PHAVU_010G089100g 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0929 10 33207374 33209510 Pvu10g0929 10 33207374 33209510 ECH