Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0919 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCGAAGAGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGGTACCATTATTTCTCCTCCTTCAACTTTCCCTTTTCTTCTTCTTAA 228 0.443 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYHYFSSFNFPFSSS* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0919 75 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 PANTHER MADS-BOX PROTEIN SOC1 1 61 - -
Pvu10g0919 75 SUPERFAMILY SRF-like 3 62 IPR036879 GO:0003677|GO:0046983
Pvu10g0919 75 PANTHER MADS BOX PROTEIN 1 61 - -
Pvu10g0919 75 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Pvu10g0919 75 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Pvu10g0919 75 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu10g0919 75 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0919 Pvu-Chr10 32859915 32861002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0919 1 60 MADS-box Gene Family AT2G45660 96.667 3.26e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu10g0919 SRF-TF 8.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0919 - - egt:105963738 119.012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0919 10 32859915 32861002 Pvu10g0919 10 32859915 32861002 ECH
Pvu10g0919 10 32859915 32861002 Pvu10g0916 10 32789317 32795530 ECH