LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0903	ATGCCATCGCGTCCGCCGCCACCCTCGCCTCACGCGGCGCTTTCCGCCGTCGTCTCGCACCGTCGAGAGATGATCCTCTGCGGGGCAATCGGCGGTGCGCTCTTCTTAACGGCGCTGATTGTCTCCGTCACGGTCTTCCTCTACCGAAAACTTTCTTACAACCGAACGGCGCCGTTCGAGCACAACCAGCGTCGTTTCTCGTACTCTGTTCTACGCCGCGCCACGAACTCGTTCTCGCCGTCGACGAAGCTCGGCCACGGCGGGTTCGGTTCGGTTCACAAAGCGGCTCTGCCTTCCGGCCAGACTGTGGCGTTGAAAGTGATGGACTCGCCCGGGTCAATCCAGGGGGAGAGAGAGTTCCACAACGAGTTGACGCTGTGTTCGAATCTGAAGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTGCTGGTTTACGAGTTGATGGCGAACCGGAGTTTGCAGGACGCGCTGCTGGACCGGCGGTGTCCGGAGCTGATGTGTTGGGCGAAGAGATTCGACGTCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCACGTGTGTGAGCCTCCGGTGATTCATGGGGATATTAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCGGTGGAGGATCTGGGAATGGTGGAGGAGAAGAAGGAAGGGGTTGCGGAGATTGGGGTTGACGAGTTTGGGGTGATGGAGGAAGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGCCGGAGAGTTGTCCGGTGAGGGTTGTGGAATACTCGGACGCGTCGCCGGTGGGGGGTGATAAACTGAGCGTGGTGTCGGATGGGTGCTTTGAGAGTGTTGATAGTGAGAATGTGAATTTGAATAAGAAGAAGGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGTGGAGGAGGGGGGGAATCGGGGAGGGTGAAGGATTATGTGATGGAGTGGATCGGGAGTGAGATAAAGAAAGAGAGGCCCAAGAGTGAATGGGTTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAATGAGAATGTGAATGTTAATGGGAGTGAGAAGAGTAAGAAGAAGGAGAGGAAGAGGTTGGATTGGTGGGCTTCTCTTGATGAGGAGAAGGTTAAGAGTAAGGTGAAGAAGAATCGAAAACCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTATCTAAGAAGAATAGGAAGAAGAAGAGGGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGTAAGGGTAGTAGAGGGAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGGAGGAATAGCCAGGATTGGGGGGTTAGTGGGGATGTGCCTAAGAGTGGTGGGATCAGTAGCACCCCTAGTATGAGGGGGACTGTGTGTTACATTGCTCCTGAGTATGGTGGAGGAGGGCAATTGTCTGAAAAGTGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGGAGGCGGCCGCTGCAGGTGACCGCATCGCCGATTTCTGAGTTTGAGAGAGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAGTGGGAGGCTTTTAGATCTTGTTGACACTTCTATTCATTCATTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATTGCCTTGTTGTGTTTGCAGAGGTGCCCCGGGAAGAGACCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCACCACACTTACCGTTCGAGTTCTCACCATCACCGCCGTCAAATTTCCTGTTCAAGGGGCGGAAGAAGGCTCGGTGA	1929	0.5438	MPSRPPPPSPHAALSAVVSHRREMILCGAIGGALFLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKAALPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLKSPFVISLLGFSSDRRGRKLVLVYELMANRSLQDALLDRRCPELMCWAKRFDVAVSVAMGLEYLHHVCEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKEGVAEIGVDEFGVMEEGESVSVVDVDRSPESCPVRVVEYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGSGRDWWWRQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKVENENVNVNGSEKSKKKERKRLDWWASLDEEKVKSKVKKNRKPREWWKEEFCEELSKKNRKKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGVSGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHSGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKAR*	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0903	642	MobiDBLite	consensus disorder prediction	474	493	-	-
	Pvu10g0903	642	ProSiteProfiles	Protein kinase domain profile.	78	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0903	642	Pfam	Protein kinase domain	81	230	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0903	642	Pfam	Protein kinase domain	481	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0903	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	202	214	IPR008271	GO:0004672\|GO:0006468
	Pvu10g0903	642	ProSitePatterns	Protein kinases ATP-binding region signature.	84	106	IPR017441	GO:0005524
	Pvu10g0903	642	SMART	serkin_6	78	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0903	642	MobiDBLite	consensus disorder prediction	360	377	-	-
	Pvu10g0903	642	Gene3D	Phosphorylase Kinase; domain 1	42	156	-	-
	Pvu10g0903	642	PANTHER	OS07G0586332 PROTEIN	1	642	-	-
	Pvu10g0903	642	MobiDBLite	consensus disorder prediction	620	642	-	-
	Pvu10g0903	642	Gene3D	Transferase(Phosphotransferase) domain 1	471	618	-	-
	Pvu10g0903	642	Gene3D	Transferase(Phosphotransferase) domain 1	157	250	-	-
	Pvu10g0903	642	MobiDBLite	consensus disorder prediction	357	384	-	-
	Pvu10g0903	642	PANTHER	OS07G0586332 PROTEIN	1	642	IPR044576	-
	Pvu10g0903	642	SUPERFAMILY	Protein kinase-like (PK-like)	53	630	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0903	Pvu-Chr10	32397927	32399855	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0903	490	612	Receptor kinase-like Gene Family	AT3G58690	37.209	1.23e-13	71.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Pvu10g0903		Pkinase	1.6e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0903	-		-	gmx:100814933	1021.92