Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0888 ATGGATCCTGTTGCAGCACAAGGACGTCCTCTCCCTCCCCCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTCCAACCCCACCACAACCACCAAAACACGGAGGATGAAGCTGCCAATGGCCGCGGCCAGAAGCGAGGTCGCGACGAGAACACCGGCAGTGGAGGCGGGGCCACCACGCCCCCCCACGCCGGCGGAGATGGCCAGGAACCCGGGTCAGGAGATGGAGGAGGAGGAAGTGAAATGGGGAGAAGGCCAAGAGGAAGACCCGCAGGGTCCAAGAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACTGCCTTCGCAAGGCGGCGACAGCGTGGTGTTTGTGTGCTCAGCGGCAGCGGCACCGTCACCAACGTGACCCTCCGGCAGCCAGCTTCTCCGGGCGCCGTTGTGACCCTTCATGGAAGGTTCGAGATTCTATCCCTGTCCGGTTCATTTCTGCCGCCGCCGGCTCCGCCAGCCGCCTCAGGACTAGCCATTTACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTGCTGGCTTCAGGTCCCGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGATGAGGAAACTCCGGTACCAGTTCCGGGCACTGGCGGATTAGGGTCGCCGGGAATTGCAGGGACACAGCAGCAATCGCAATCTCAGCCGCAACAGCCACAGCAGCTTGTGGGAGATCCCAATACTTCTTCTCTCTTCCATGGAGTTCCTCAGAATCTTCTGAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCACTGCACGCCCCTCTTTTTAA 933 0.582 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGQKRGRDENTGSGGGATTPPHAGGDGQEPGSGDGGGGSEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVPVPGTGGLGSPGIAGTQQQSQSQPQQPQQLVGDPNTSSLFHGVPQNLLNSVQLPAEGYWGGTARPSF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0888 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 310 - -
Pvu10g0888 310 MobiDBLite consensus disorder prediction 239 286 - -
Pvu10g0888 310 MobiDBLite consensus disorder prediction 1 105 - -
Pvu10g0888 310 Gene3D - 114 243 - -
Pvu10g0888 310 ProSiteProfiles PPC domain profile profile. 111 249 IPR005175 -
Pvu10g0888 310 CDD DUF296 115 182 IPR005175 -
Pvu10g0888 310 MobiDBLite consensus disorder prediction 254 286 - -
Pvu10g0888 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 227 IPR005175 -
Pvu10g0888 310 PIRSF ESCAROLA 16 310 IPR014476 GO:0003680
Pvu10g0888 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 246 - -
Pvu10g0888 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 310 IPR014476 GO:0003680
Pvu10g0888 310 MobiDBLite consensus disorder prediction 19 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0888 Pvu-Chr10 31769921 31771591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0888 1 310 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.742 3.07e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0888 - - gmx:100816243 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0888 10 31769921 31771591 Pvu10g0888 10 31769921 31771591 ECH