Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0867 ATGCATAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAACATGCATAATCATCCTGCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAATCTTCCTCCTAGGGCCTTTCGTCAAGAAGTTGCTTCATTCCGTGACCATCATAGTGATATACAATTGGACATTGACGACATGTCATATGAGGAGCTTCTTATATTAGGTGAACGGATTGGCAGCGTAGAGAGGGGTTTGTCCGAAGAAATTATTGCAAGCCAAATGCTAACAAAAACTTATCTACTGCCTAATAACTTGGAGGGATCAACTTCTGAGGAACTGGAAATCGATCTTTGCATAATATGTCAGGATGAATATAAGAACGAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTATGTCCCCTATGCAAATCAAAAGCATTGGCTATTGGATAG 489 0.411 MHRGHSNFHARRGNMHNHPARGHSNFHAPRGNMHNLPPRAFRQEVASFRDHHSDIQLDIDDMSYEELLILGERIGSVERGLSEEIIASQMLTKTYLLPNNLEGSTSEELEIDLCIICQDEYKNEEEIGILQCGHEYHADCVRRWLQEKNVCPLCKSKALAIG* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0867 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 160 IPR013083 -
Pvu10g0867 162 SMART ring_2 114 154 IPR001841 -
Pvu10g0867 162 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Pvu10g0867 162 PANTHER OS04G0185500 PROTEIN 41 159 - -
Pvu10g0867 162 Pfam Ring finger domain 113 155 IPR001841 -
Pvu10g0867 162 SUPERFAMILY RING/U-box 113 158 - -
Pvu10g0867 162 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 41 159 IPR045191 GO:0061630
Pvu10g0867 162 MobiDBLite consensus disorder prediction 1 34 - -
Pvu10g0867 162 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0867 Pvu-Chr10 31081417 31082186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0867 43 159 C3H Transcription Factor Family AT2G15530 46.154 8.38e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0867 K19041 - pvu:PHAVU_010G0831000 296.975