Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0866 CCAACTCCCAGTGCTAATGTAAGTTCATTAGAGAATTCAAGAATGAATCTCCACAGATATCATGATACAATTGGAAGTAGAAGGAACCACAGATTTGCCCATCAGCACTACCATCATCATGCACCGCCTGTGCAAGTGCAAGAGATGAGAGGTCACTCTAACTTTCATGCTCGTAGAGGTAACATGCATAGAGGTCACTCCAACTTTCATGCTCGTAGAGGCAACATGCATAATCATCCTGCTAGAGGTCACTCCAACTTTCATGCTCCTAGAGGCAACATGCATAATCTTCCTCCTAGGGCCTTTTGTCAGGAAGTTGGTTCATTTCGTGACCATCATAGTGATATACAATTGGACATTGACGACATGTCATATGAGGCAAGGGTTTGTCCGGGTTTGTCCGAAGAAATTATTGCAAGCCAAATGCTAACAAAAACTTATCTACTGCCTAATAACTTGGAGGGGTCAACTTCTGAGAAACTGGAAATCGATCTTTGCATAATATGTCCGGATGAATATAAGAACGAAGAGGAGATTGAAATTCTTCAATGTGGACATGAATACCATGCAGATTGTGTAAGGAGATGGTTACAAGAGAAAAATGTATGTCCCCTATGTAAATCAAAAGCATTGGCTATTGGATAG 645 0.4124 PTPSANVSSLENSRMNLHRYHDTIGSRRNHRFAHQHYHHHAPPVQVQEMRGHSNFHARRGNMHRGHSNFHARRGNMHNHPARGHSNFHAPRGNMHNLPPRAFCQEVGSFRDHHSDIQLDIDDMSYEARVCPGLSEEIIASQMLTKTYLLPNNLEGSTSEKLEIDLCIICPDEYKNEEEIEILQCGHEYHADCVRRWLQEKNVCPLCKSKALAIG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0866 214 SUPERFAMILY RING/U-box 165 210 - -
Pvu10g0866 214 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 213 - -
Pvu10g0866 214 SMART ring_2 166 206 IPR001841 -
Pvu10g0866 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 212 IPR013083 -
Pvu10g0866 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 213 IPR045191 GO:0061630
Pvu10g0866 214 Pfam Ring finger domain 165 207 IPR001841 -
Pvu10g0866 214 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0866 Pvu-Chr10 30976088 30976982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0866 104 211 C3H Transcription Factor Family AT2G15530 36.752 3.91e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0866 K19041 - pvu:PHAVU_010G0831000 444.121