Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0858 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGATATCAGGAAGGACAGGGCCCCACTCTCTGCCCTTGGCAAGGATAATGAAGATCATGAAGAAGTCAAGGGAGGATGTTAAAATGATATCAGGGGAGTCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTCAGGAGCTAACTAGAAGGTCCTGGATCATTGCCATCCAAGGCAAAAGGAAGACTTTGCACAAAGAGGACTTAACCTCTGTAGTTATAGCCACTGATATATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAGCCATGCACTTGGTGCCACCACCACTATTTTGGAGGTTGAAACTATAGACTAG 366 0.4399 MRQAGAYSGLLCGGISGRTGPHSLPLARIMKIMKKSREDVKMISGESPIIFSKACELFIQELTRRSWIIAIQGKRKTLHKEDLTSVVIATDIFDFLITLVSNSDSHALGATTTILEVETID* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0858 121 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
Pvu10g0858 121 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Pvu10g0858 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Pvu10g0858 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Pvu10g0858 121 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0858 Pvu-Chr10 30651000 30651365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0858 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.831 1.05e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu10g0858 CBFD_NFYB_HMF 4.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0858 - - gmx:100777614 210.69