Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0830 ATGGCATCATTATCATCTTCATTTTCCTCAGTAATAATAACCCTTCTACTTGTTCCCTTTCTATTTTCCTCCATTGCCTTCTCTTACTCATTCAAAGATATTCAATCATGGTGCAACCAAACCCCTTACCCTCAACCTTGTGAGTACTACTTGACCAGCCATACCTTCAACAAACCCATCAAAAGCAAATCCGATTTTCTCCAAGTTTCCCTTCAACTTGCCCTAGAGAGAGCAGAAAGGGGCCAACTAAACACCCATTCCATAGGGCCAAAGTGCCGCAACGTCCATGAAAAATCTGCATGGACCGATTGCATTGAACTCTACGACTACACCATTCAAAGACTCAACAAAACTCTTGACCCTTACACCAAATGCACCCAAACCGACACACAAACATGGCTCAGCACAGCCCTCACAAACCTGGAAACATGCAGAGCCGGGTTGTACGAACTTGGTGTCCAAGATTACATGCTACCCTTGATGTCCAATAATGTCACAAAGTTATTAAGCAACACCCTCTCTCTCAACAAGGATTCCAATTACCCCTTCAAACCACCAAGTAGCCAAGAGGGGTACCCTACATGGGTGAAGCCAGGTGATAGAAAGTTGTTGCAATCATCTTCTGCTGCTTCTCAAGCTAATGTTGTTGTGGCCAAAGATGGCTCTGGAAAGTACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCATCGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTATACAATGAACAAGTTGAGATCAAATCAAAGAATATAATGTTGGTCGGAGATGGAATTGGAAAAACGATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCTCCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTGGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACTGCAGGAGCAGCAAATCACCAAGCAGTGGCATTCCGTTCTGGGTCAGATCTCTCAGTGTTCTACAGATGCAGTTTTGAGGGTTATCAAGACACATTGTATGTGCATTCAGAGAGGCAATTCTACAGAGAATGTGATGTCTATGGCACAGTGGACTTCATCTTTGGCAATGCTGCTGTGGTATTGCAGAACTGCAACATCTATGCAAGAACCCCTCCTCAGAGAACCATCACAGTCACTGCTCAGGGTAGAACTGACCCTAACCAAAACACTGGAATCATCATCCACAACTCCAAGGTCACTGGTGCCTCAGGCTTCAACCCTAGTTCTGTGAAATCATACCTTGGGAGGCCCTGGCAGAAGTACTCAAGAACAGTGTTCATGAAGACCAACCTTGACAGTTTGATCAACCCTGCTGGTTGGATGGAATGGGATGGTAACTTTGCTTTGGACACTTTGTATTATGCAGAATATGCAAACACTGGTCCTGGCTCCAACACTGCCAATAGGGTCACTTGGAAGGGTTACCATGCTCTCACTGCTGCATCACAGGCCACACCTTTCACCGTTGCAAACTTCATTGCTGGCAACTCCTGGATACCCAGCACTTCTGTTCCTTTCACCTCTGGACTTTAA 1563 0.453 MASLSSSFSSVIITLLLVPFLFSSIAFSYSFKDIQSWCNQTPYPQPCEYYLTSHTFNKPIKSKSDFLQVSLQLALERAERGQLNTHSIGPKCRNVHEKSAWTDCIELYDYTIQRLNKTLDPYTKCTQTDTQTWLSTALTNLETCRAGLYELGVQDYMLPLMSNNVTKLLSNTLSLNKDSNYPFKPPSSQEGYPTWVKPGDRKLLQSSSAASQANVVVAKDGSGKYTTVKAAVDAAPSSSSGRYVIYVKSGVYNEQVEIKSKNIMLVGDGIGKTIITGSKSVGGGSTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDVYGTVDFIFGNAAVVLQNCNIYARTPPQRTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTNLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSNTANRVTWKGYHALTAASQATPFTVANFIAGNSWIPSTSVPFTSGL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0830 520 CDD PMEI-like_3 36 177 - -
Pvu10g0830 520 PANTHER PECTINESTERASE 10 519 - -
Pvu10g0830 520 SUPERFAMILY Pectin lyase-like 208 519 IPR011050 -
Pvu10g0830 520 Pfam Plant invertase/pectin methylesterase inhibitor 33 175 IPR006501 GO:0004857
Pvu10g0830 520 SMART PMEI_2 29 175 IPR006501 GO:0004857
Pvu10g0830 520 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Pvu10g0830 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 177 IPR035513 -
Pvu10g0830 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 178 IPR035513 -
Pvu10g0830 520 Pfam Pectinesterase 214 506 IPR000070 GO:0030599|GO:0042545
Pvu10g0830 520 PANTHER PECTINESTERASE 10 519 - -
Pvu10g0830 520 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Pvu10g0830 520 Gene3D - 208 520 IPR012334 -
Pvu10g0830 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0830 Pvu-Chr10 29799398 29803448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0830 7 520 Carbohydrate Esterase AT2G45220 66.151 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0830 K01051 - gmx:100782892 932.554