Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0824 ATGGGAAGAACTCCTTGCTGCAGTCACGAGGAACTCAGAAAAGGTGCATGGACAGCTCAAGAAGATCAGAAACTCATTGCTTACATTCAGAATCATGGCACTGGAAGCTGGCGTACCTTGCCTCAGAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCAGACATTAAGAGAGGAAAATTGAGCCCAGAAGAAGAGCAGAAAATTATAAAACTTCAGGCTGTTCTTGGCAACAGGTGGTCAAGTATAGCAAAGCATTTACCAATGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAGGCACTACGAAAAGAATGATGTGGATCCATCGAGTTCAAAACCAATTAGCACTGCAAGTTCCACAGAATCAAAATCCAGTGAGTTGTGCATGGTTCCATCAAAAGAAACTGTTTGCCATGGACCAAATGCCACTACACACCAATCTAATCACTCAAGCTTACCAAAGTCAATGTCTTCAACTCAGCTTCTCAACAAAGTTGCTAGTAAAATTCTTGCATCTGGGTACCTAGAAGCAATTAAATCATATAAACCTGTTGCTGCTGGGAACAGCAACAGTAATAGTGTGGTTAAAACTGGAACTGGAATAGAACCGGAGAATAACAGAGACCCCCTTGTGTCTAATATGGCCTCATCAAATCATTCAGTAACTTCTGCTCAGTTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCATGGCCTTGAATCTGCAAAAGCTGTTTTTTCAAAATTGTTGGAAAGTAGTGAAAAAGGTGAGACTGGTAGTGATGGTAGCTTTATTAGCAGTGATGAAATTGGAGATAGCTTTATTAGCAGTGATGAGGGAGTGAAGATGGCTACTTCACTCCCTCATAAAGTTCATGGCCTTGAATCTGCAAAAGCTGTGTTTTCAAAATTGTTGGAAAGTAGTGAAAAAGGTGAGACTGGTAGCGATGGTAGCTTTATTAGCAGTGATGAAATTGGAGATTGTTTGAATGCTCTAAGCGCTTTTCAGGAAGCACCACACATAACAAAAATGGCAGGGTCCCCTTCTAGTCCTTCACTGATATTCGATCAAGTGGCCACACCCTCATGCTTTTCAGACAATAATGAAGATAATTGGCAATGCGTTTCATCTAACTATGTGTCCTTCAGATATTGTGCTCCAAGTGGTGGTGGTGACTGCAGTGTGTCTGAACTCAACTTGGGTGAGTCTTCTAGTTCAACATCGTGCTTCCTGTTTGAGAATGCTGATCTTGGAACGTGTGATGATGAAATAAGCAAGTACATTCAGTATTTGTAA 1347 0.4113 MGRTPCCSHEELRKGAWTAQEDQKLIAYIQNHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRHYEKNDVDPSSSKPISTASSTESKSSELCMVPSKETVCHGPNATTHQSNHSSLPKSMSSTQLLNKVASKILASGYLEAIKSYKPVAAGNSNSNSVVKTGTGIEPENNRDPLVSNMASSNHSVTSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGETGSDGSFISSDEIGDSFISSDEGVKMATSLPHKVHGLESAKAVFSKLLESSEKGETGSDGSFISSDEIGDCLNALSAFQEAPHITKMAGSPSSPSLIFDQVATPSCFSDNNEDNWQCVSSNYVSFRYCAPSGGGDCSVSELNLGESSSSTSCFLFENADLGTCDDEISKYIQYL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0824 448 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu10g0824 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu10g0824 448 CDD SANT 16 61 IPR001005 -
Pvu10g0824 448 PANTHER TRANSCRIPTION FACTOR MYB51 1 239 - -
Pvu10g0824 448 MobiDBLite consensus disorder prediction 119 140 - -
Pvu10g0824 448 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu10g0824 448 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu10g0824 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu10g0824 448 SMART sant 13 63 IPR001005 -
Pvu10g0824 448 SMART sant 66 114 IPR001005 -
Pvu10g0824 448 Gene3D - 14 66 - -
Pvu10g0824 448 MobiDBLite consensus disorder prediction 151 170 - -
Pvu10g0824 448 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu10g0824 448 CDD SANT 71 112 IPR001005 -
Pvu10g0824 448 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu10g0824 448 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Pvu10g0824 448 Gene3D - 69 142 - -
Pvu10g0824 448 MobiDBLite consensus disorder prediction 123 140 - -
Pvu10g0824 448 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0824 Pvu-Chr10 29502170 29504600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0824 1 128 MYB Transcription Factor Family AT5G15310 68.750 6.18e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g0824 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0824 K09422 - pvu:PHAVU_010G079300g 894.419