Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0823 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAATTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGCCTGCTTCTTCCTTCAGCTAATCAGATTCACCTGGGCCACACCTTTTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCAACAAACATGGTGATGAATCAGATGCCAAACCCTAATGATTTGGTCATGCGCACCATGCGAGGAGGGCCAGAAGAAACCCCTAAGCCTCCATCTGCTAATAGACCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAATCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTTCTTATCAAAGATGGGTTTTTCGCACCAGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4753 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQIHLGHTFFTPQNLLEEIRNAPSTNMVMNQMPNPNDLVMRTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0823 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Pvu10g0823 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Pvu10g0823 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Pvu10g0823 215 PANTHER PROTEIN YABBY 4 1 213 - -
Pvu10g0823 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Pvu10g0823 215 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0823 Pvu-Chr10 29466002 29468643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0823 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 63.810 1.08e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pvu10g0823 YABBY 8e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0823 K25796 - gmx:100781267 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0823 10 29466002 29468643 Pvu10g0823 10 29466002 29468643 ECH