Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0820 ATGGATTCTAGGAGGCGTAAAAACGCATCTATGCAACGCAAGTTGCAACAACTTCGATCGGTCACAAATTCTAGTGCTGTTAATAAAGCCTCCATTATTGTGGATGCCACAAGATACATAGAGGAGTTGAAGCAAAAAGTGGATGGATTGAACTCTGAGCTTGGAACCGCTGAATCATCAATCTCCCAAGACGAACTACCCATGGTCACTGTAGAAACCCTAGAAAGGGGTTTCCTCATTAATGTGTTTTCAGAAAGGAATTGCCCCGGCATGCTTGTGGCAATACTCGACGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTGAAGCTGTAGGAGGAGAAAGTCAAGAGAACGAAAGCATCGATGCCCAAGTGGTGAAGCAAGCAGTGATGCAAGCAATCCAAAACATGGATTAA 450 0.4444 MDSRRRKNASMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVMQAIQNMD* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0820 149 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
Pvu10g0820 149 CDD ACT_UUR-ACR-like 89 145 - -
Pvu10g0820 149 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 149 - -
Pvu10g0820 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 61 IPR036638 GO:0046983
Pvu10g0820 149 Coils Coil 33 60 - -
Pvu10g0820 149 Gene3D - 1 66 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0820 Pvu-Chr10 29068806 29070637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0820 3 62 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 39.344 2.57e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0820 - - gmx:100500546 275.789