Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0786 ATGGAACCGGAGGAAGCCGCCGTCACCGCCGTCTCCGCCTACGACGGAAGTGGCGACGAGGGAATGCTGGTGTTGGACGGCGGCGATGTCGGCGGCGGCAAGGACAGAGTGAAGGGCCCTTGGTCGCCGGAAGAGGACGCCATTCTGAGTCGTCTCGTTAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCGCGCGGGATCAGTGGAAGATCCGGCAAGTCGTGCCGCCTCCGGTGGTGCAACCAGCTCGACCCTTCCGTTAAGCGCAAGCCCTTCACCGGTACGTGA 291 0.6426 MEPEEAAVTAVSAYDGSGDEGMLVLDGGDVGGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTGT* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0786 96 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Pvu10g0786 96 Gene3D - 37 89 - -
Pvu10g0786 96 PANTHER - 5 94 - -
Pvu10g0786 96 SMART sant 37 86 IPR001005 -
Pvu10g0786 96 PANTHER MYB PROTEIN-RELATED 5 94 - -
Pvu10g0786 96 SUPERFAMILY Homeodomain-like 39 94 IPR009057 -
Pvu10g0786 96 CDD SANT 40 82 IPR001005 -
Pvu10g0786 96 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Pvu10g0786 96 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0786 Pvu-Chr10 23403352 23403642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0786 6 94 MYB Transcription Factor Family AT3G55730 64.045 6.46e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu10g0786 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0786 K09422 - pvu:PHAVU_010G075600g 171.4