Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0762 ATGGATTACATTCACCCTGCCTCATCTGCAGGATCCTCTTCAAAGATAAACAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTCTCCATGCTGGAGGAAGCTATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACCATGATCAATTTCTTTGATGATAACGACTCACTTTCTCCTATCTACCTTAGTGATTGTTACTTCCCTTCTGACCCTTCTGAACACTTCATTTCCCCTCAGCAAGATCCACAGCTTGATCATAGCATGCACAATTTTCCTCATCTGCCACAACTACAATGCAGCTTCCATGGTGAAGACACAACCTACTTTGACATGCCTCTTTAA 477 0.4528 MDYIHPASSAGSSSKINRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFFDDNDSLSPIYLSDCYFPSDPSEHFISPQQDPQLDHSMHNFPHLPQLQCSFHGEDTTYFDMPL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0762 158 CDD bHLH_AtIND_like 34 93 - -
Pvu10g0762 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 92 IPR036638 GO:0046983
Pvu10g0762 158 Gene3D - 37 91 IPR036638 GO:0046983
Pvu10g0762 158 SMART finulus 39 88 IPR011598 GO:0046983
Pvu10g0762 158 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 15 103 - -
Pvu10g0762 158 MobiDBLite consensus disorder prediction 1 38 - -
Pvu10g0762 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Pvu10g0762 158 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Pvu10g0762 158 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 103 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0762 Pvu-Chr10 22153698 22154300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0762 27 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 60.000 1.37e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0762 HLH 9.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0762 - - pvu:PHAVU_010G073400g 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0969 8 9818538 9819038 Pvu10g0762 10 22153698 22154300 PCT