Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0740 ATGAGGTCTCACATGATGAACCTACCTGTTCCTCTGAAAGAGACCGAGTTCGTCCCGGTTCAACTCAGTTTTGAGGCCGACTCATCCCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAACCCCAAAAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGAAACGGGCTCCGTGATCCTCCAAGATAGAGAGAGCGAGACCGAGTCATCCAAGAACCCAACTCGGAAACGATCCAAGAGAGCTTGGCAACTCGGAGAACCCCTGAAAAAAATGAAACTCTTTGAAAATAATAACAAGAACGAATCTGCAAGTTCTGCTTCCGATACCACCACGGAGGAGGCCGTGGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGAAGTATGATGATCATAAAAACATACAACAGTATGATGATGAGGTTGAAGATGATGGTGACAACGATGATGAAGATGAAGAAGAGGATGATGAAGAAAAAGATGGTTTTGAATTCGAGGAGATGAAATCTGTAAAGAGGAGTAACAAGGTGCGAGGGAGGTACAAATGTGAAACGTGTGATAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCAAGTCACAAGAAAATGAAGTTAAACTCTGAAACGGAGTTTCAGAAGACTGAACCTGAATTGGAGCATGTTGCTGTGGCGGAGAAGAAAGTCCACGAATGCCCCGTTTGCTTTAGAGTCTTTGGTTCGGGTCAAGCCCTCGGTGGACACAAGAGAACACATGTTATAGGTTCCTCTGCAACTACAACCACCGCCACTGTCAGAACTTCTGCAAATGTCAGAACTTCTGCAACTGTTTCGGTTGGAGCTTCTGCTAGAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCAATGGATGATGATGAAGACATTAGCCAGTTCGACCACTCCGCTCTTTCGGATGCAGAGTTTGTCAAACAGTGA 990 0.4545 MRSHMMNLPVPLKETEFVPVQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFSFAAETGSVILQDRESETESSKNPTRKRSKRAWQLGEPLKKMKLFENNNKNESASSASDTTTEEAVAFCLMMLSRDRWKKYDDHKNIQQYDDEVEDDGDNDDEDEEEDDEEKDGFEFEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNSETEFQKTEPELEHVAVAEKKVHECPVCFRVFGSGQALGGHKRTHVIGSSATTTTATVRTSANVRTSATVSVGASARVGDSLIDLNLPAPMDDDEDISQFDHSALSDAEFVKQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0740 329 SMART c2h2final6 188 210 IPR013087 -
Pvu10g0740 329 SMART c2h2final6 239 261 IPR013087 -
Pvu10g0740 329 MobiDBLite consensus disorder prediction 147 170 - -
Pvu10g0740 329 Pfam C2H2-type zinc finger 187 212 - -
Pvu10g0740 329 Pfam C2H2-type zinc finger 238 261 - -
Pvu10g0740 329 SUPERFAMILY beta-beta-alpha zinc fingers 187 261 IPR036236 -
Pvu10g0740 329 MobiDBLite consensus disorder prediction 70 88 - -
Pvu10g0740 329 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 328 IPR044303 GO:0006355
Pvu10g0740 329 Gene3D Classic Zinc Finger 185 261 - -
Pvu10g0740 329 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
Pvu10g0740 329 MobiDBLite consensus disorder prediction 61 88 - -
Pvu10g0740 329 MobiDBLite consensus disorder prediction 143 172 - -
Pvu10g0740 329 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 328 - -
Pvu10g0740 329 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Pvu10g0740 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 261 IPR013087 -
Pvu10g0740 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0740 Pvu-Chr10 19145148 19147366 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0740 1 311 C2H2 Transcription Factor Family AT3G60580 43.438 1.45e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu10g0740 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0740 - - gmx:100780611 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1486 8 26243012 26244166 Pvu10g0740 10 19145148 19147366 PCT