Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0738 ATGGCTTTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAGGTGGTCACATGGATGATGATGATCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTTCCACCAAGCAACAAACGCATGTATGCTTTAAGGACAAATCCTAATAGACTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCTGACTCCTTTGTCTCCTCTCCGGGCTCTGATGCGGATGACGGTGGCATCGGCAGCGACCGGAGAGGATGTGGGTGGTCTAAAAGGAAAAGGTCTCTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTAGCAAATTGTTTAATGATGTTGTCCAATGCCATTGTAGATCCTCTTGCTGCTGAGCCTGAAGAATCATGTGCATCCGCTAGCAAGGAGGAAGAACAACGAAGAAATCCCATGAATTTCATTGCTCCATTGTCGTACAAAGTTAATAACAACAACAATATTCACACCATGAACAACCTTGTTGATAACAAGGCCAAAGGGATTTCCAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACCTTGATGACAATCTCATCACCGATGATGATGTAATCACACATGAAGAACTCTTTGCTACAAAATCAAACTCCACCCTCCAATTCGACCATGGCTCCAACCCCACATTGGCCTCTTCCTCCAAAAGGAAATCCAAAGTGCATGAATGTTCCATTTGCCACAGAAGTTTCTCTTCAGGACAAGCCCTTGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCTGACACCTCCACATTAACAAGATTTCAACAATTTCACGACCATTTGGATCAAATACCCAAGTTTGACACCTCTTCTGAGCCTCTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCTTCCAATGACCTTGCAAGAAGGAATGTTTCCACAGAAATTTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGATAACAATAGCCAGTGTCAAAGTCTCCATCACAATAACAACAATGTTGATATTGACAACAACGATGAGGACAAAAACACTAACAACTCAATGCAAAATTTGGATAACGAAGCTGATCATAAGATCAAGTTGGCCAAACTAAGTGAGCTAAAGGACATGAACATTGGAGGCAGTTCTTCGCCATGGTTGCAGGTGGGAATCGGTTCAGCTGTTACTGACGTAACAACTGATAACTCCTGA 1461 0.4285 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIGSDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLAAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNIHTMNNLVDNKAKGISKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITDDDVITHEELFATKSNSTLQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHHNNNNVDIDNNDEDKNTNNSMQNLDNEADHKIKLAKLSELKDMNIGGSSSPWLQVGIGSAVTDVTTDNS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0738 486 SUPERFAMILY beta-beta-alpha zinc fingers 230 335 IPR036236 -
Pvu10g0738 486 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Pvu10g0738 486 SMART c2h2final6 313 335 IPR013087 -
Pvu10g0738 486 SMART c2h2final6 13 35 IPR013087 -
Pvu10g0738 486 SMART c2h2final6 231 253 IPR013087 -
Pvu10g0738 486 Gene3D Classic Zinc Finger 11 103 - -
Pvu10g0738 486 Gene3D Classic Zinc Finger 228 335 - -
Pvu10g0738 486 Pfam C2H2-type zinc finger 312 337 - -
Pvu10g0738 486 Pfam C2H2-type zinc finger 13 35 - -
Pvu10g0738 486 Pfam C2H2-type zinc finger 231 255 - -
Pvu10g0738 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Pvu10g0738 486 MobiDBLite consensus disorder prediction 39 59 - -
Pvu10g0738 486 MobiDBLite consensus disorder prediction 404 422 - -
Pvu10g0738 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 335 IPR013087 -
Pvu10g0738 486 PANTHER OS02G0659100 PROTEIN 1 483 - -
Pvu10g0738 486 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Pvu10g0738 486 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Pvu10g0738 486 ProSitePatterns Zinc finger C2H2 type domain signature. 315 335 IPR013087 -
Pvu10g0738 486 MobiDBLite consensus disorder prediction 404 443 - -
Pvu10g0738 486 MobiDBLite consensus disorder prediction 39 54 - -
Pvu10g0738 486 PANTHER OS02G0659100 PROTEIN 1 483 - -
Pvu10g0738 486 MobiDBLite consensus disorder prediction 108 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0738 Pvu-Chr10 19040289 19041749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0738 135 378 C2H2 Transcription Factor Family AT1G02040 36.145 2.91e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu10g0738 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0738 - - gmx:100793846 834.328