Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0736 ATGCAAGGTCTTAGTTACATCTCGTTTGTTGCAATACTTTGTTCCCTGTTCCTAATCCCTAGCCATGGTAACAAAACTAATAATGCTGCATGGCAAAAAGGAGGAGCTACATGGTACGGAGACCCAGAGGGTGCTGGATCTGATGGGGGTGCTTGTGGATTTACTGACACTGTGAGCAAACCTCCACTCTCTAAAATGATCGTTGCTGGAGGTTCTACTCATTTTAAAAATGGAATAGGATGTGGAGCTTGTTTTGAGGTGAAATGCTCAGAACACAAAGATTGTTCAGGAAAAGTAGTGAAAGTGATGGTCACTGATTTATGCCCTGGCGGTTTCGCAGGAGGAATCCATCTTGATCTGAGTGGCACTGCATTTGGTGCCTTGGCAAAGCCAGGCAAAGCACAACAACTTCGTAATGCTGGAGAACTTAAAATTCTCTACAAAAGGGTTGCATGCTCCTTTGGGAAATCTATTCACTTTACTGTCGACGCTGGATCCAACCCATACTATTTTGCAACTGCAATAGAATATCATAATGCGGATGGTAACCTTGTGCAGATTGAGCTGAAGCAAGCTAATACTAACAAATGGATTCCAATGAAACATTCATGGGGTGCAAAGTGGGCTTTGGATTTAGGTTCAAAGTTGCAACCACCATTCTCCCTTAAGCTCACTCAAGATGGCAAGATCAAAAAGAAAAGCATTGTGGCTCATAATGTAATTCCAATTCAGTGGAAACCTGGTCATGTTTATCGATCTGTTAATAACTTTTAA 774 0.4199 MQGLSYISFVAILCSLFLIPSHGNKTNNAAWQKGGATWYGDPEGAGSDGGACGFTDTVSKPPLSKMIVAGGSTHFKNGIGCGACFEVKCSEHKDCSGKVVKVMVTDLCPGGFAGGIHLDLSGTAFGALAKPGKAQQLRNAGELKILYKRVACSFGKSIHFTVDAGSNPYYFATAIEYHNADGNLVQIELKQANTNKWIPMKHSWGAKWALDLGSKLQPPFSLKLTQDGKIKKKSIVAHNVIPIQWKPGHVYRSVNNF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0736 257 PANTHER EXPANSIN-LIKE PROTEIN B1 2 257 - -
Pvu10g0736 257 SUPERFAMILY PHL pollen allergen 156 253 IPR036749 -
Pvu10g0736 257 Pfam Expansin C-terminal domain 158 242 IPR007117 -
Pvu10g0736 257 Gene3D - 154 257 IPR036749 -
Pvu10g0736 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 253 IPR007117 -
Pvu10g0736 257 PANTHER EXPANSIN-B3 2 257 - -
Pvu10g0736 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 157 IPR007112 -
Pvu10g0736 257 SUPERFAMILY Barwin-like endoglucanases 28 154 IPR036908 -
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 69 80 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 89 99 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 129 144 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 160 175 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Major pollen allergen Lol pI signature 206 223 IPR005795 GO:0005576|GO:0019953
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Pvu10g0736 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Pvu10g0736 257 SMART dpbb_1 67 147 IPR007112 -
Pvu10g0736 257 Gene3D - 20 153 IPR036908 -
Pvu10g0736 257 Pfam Lytic transglycolase 68 146 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0736 Pvu-Chr10 18867416 18869924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0736 26 257 Expansin Gene Family AT1G65680 51.709 8.30e-85 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0736 - - pvu:PHAVU_010G070900g 541.191