Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0733 ATGAGCCAACGTGTCCCTAGCTGTGATGTGGACGACAACACCATTCCCACACCCACAAAGTTCTCTCTTCTTTCCACCTCCAATTTCACAGCCCATGAAGTCCCAAAGTTGGTCTACAAAGGGGCATGCAAGAAGGGACAACCTTTGACCCCTGAAGACAGCCCTGGGAGGAACCAAACAACATGGGACATACCTCGTACAAGTGGAACCTTGGAGTCCATTGTGAACCATCGTATCGGCAAAAACTGCCACAAGTCAGTTACTAAGGACGCCTTAGTGCCCTGTTTTCCCAAACAGAGCACAATGTTTGGCGCGTGCAAGAAGGGTTACTCTATGCGCGTGGAGTCTGGAGCTGGGGTGGTGGCGCGTGGTCCCACAACGCATGAGTTGAGTGGCGGCAAGGACTCGAATGTGAGTGGTAGTGACACTTATCCAAGGGAGTTGAGCGTGACTTTCAATTCAGACACCATGGGTTGCCCGGAAAACACCTGTAGTTCTGGTAAGCAGTGTACGGACACCACTGCCATCGACGACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGCAGGAGAAGAGGATTGCAAGAGAAGTGGAGTTGATAGATATTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAACTGGTCCCGAATTCCAGCAAGCAGACGGATAAAGCTTCGATGTTGGATGAGGTTATCCAATATATGAAGCAACTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATTATGCTGCCAATTGCCATGCAACAACAACAGCTTAAAATGTCGATGATTATGACTCAAATGGGCATTGGAATGAGAATGAGTAAGGAAATGACTATGAATATGAACAACATTAACATTCCCTCCATTCCTCCCATGCTCCACCTTCCTCCTTTCATGCCTGTGGCTTCATGTGCTGATCAATTACTAGGAGAACCACCGAAGTCAGTGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATTCTCCATATTCTACCTCCAAGAAATGA 1119 0.4656 MSQRVPSCDVDDNTIPTPTKFSLLSTSNFTAHEVPKLVYKGACKKGQPLTPEDSPGRNQTTWDIPRTSGTLESIVNHRIGKNCHKSVTKDALVPCFPKQSTMFGACKKGYSMRVESGAGVVARGPTTHELSGGKDSNVSGSDTYPRELSVTFNSDTMGCPENTCSSGKQCTDTTAIDDRDSVSHRRSQSEAGEEDCKRSGVDRYCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKQTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSIMLPIAMQQQQLKMSMIMTQMGIGMRMSKEMTMNMNNINIPSIPPMLHLPPFMPVASCADQLLGEPPKSVTVDAYSKMAALYNQMYHSPYSTSKK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0733 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 277 IPR036638 GO:0046983
Pvu10g0733 372 Coils Coil 218 238 - -
Pvu10g0733 372 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 371 IPR031066 -
Pvu10g0733 372 Gene3D - 207 273 IPR036638 GO:0046983
Pvu10g0733 372 MobiDBLite consensus disorder prediction 164 200 - -
Pvu10g0733 372 MobiDBLite consensus disorder prediction 173 200 - -
Pvu10g0733 372 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 40 371 - -
Pvu10g0733 372 MobiDBLite consensus disorder prediction 45 65 - -
Pvu10g0733 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Pvu10g0733 372 MobiDBLite consensus disorder prediction 130 144 - -
Pvu10g0733 372 CDD bHLH_AtPIF_like 212 275 - -
Pvu10g0733 372 MobiDBLite consensus disorder prediction 124 144 - -
Pvu10g0733 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Pvu10g0733 372 SMART finulus 218 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0733 Pvu-Chr10 18650913 18655909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0733 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.234 4.04e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0733 HLH 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0733 - - gmx:100788617 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1490 8 26710248 26715678 Pvu10g0733 10 18650913 18655909 PCT