Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0729 ATGGAGTCAAAGAACTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAATGCGGTTCTGCTTATGAGCAATCAACATATTGTGATATGTTCCACCCAAACGATTCTGGTTGGAGGAAATGCACGTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAAGCAATGAAAAGCCTAATGGATCTGGGACATCAAAGGTAATAGATGCCAGTGCGCAGCAGTGCACTACACTGGCTAACCAATTAAATGTGAGGGGTATGCAAGGAGGGCATTACGCAGAGAATGATGGTCTCCGATGCTGGTTCAAACCTCATAAAGTTGAAACAGATGGGCTTTCTACAGAAATGAAACCCGAAGTTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAGCTGTAAGGTAGACTCAGAAATGCGAGATATATATGATTCTCTGGCACAGACAAATTTAAGTATGACCCTTGCTACTCCCTTAGGAAATTCAAACCCCTTTCATAATTCTGTCGTTGATGAAAGGGAACAAAGTAAAGCATCTTCACTTTTGTTGGGGTCAAGGTCTCGCCATCTTTTACCTAAGCCCCCAAGGTCAACCAGTGGCACGGGCTTAGAAGTAAATGCTGGAATGATATCCCAGATTCGTGTGGCAAGGCCACCTGCTGAAGGACGTGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTTGAAAAGATGCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCAATTTCTCAACCAGAGGGCCTTCCTTTAAGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAGCTTATAATGGGGTTTAGAAAGGCAACAAATTCTACAGCAGTACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTGTATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCTGCTGGTGGTGACATGAACTGGCATAACATTGACATGCCCGAAAGCAGGAAAAGAGAGGGGTTGCCTTTGCCGCCTTTGCTTGTTCCTGAGAAGAAAAGAACTAGGAATATTGGGTCAAAAAGTAAAAGGATGCTTATTGATAGCCAGGATGCAATGGAGCTGAAACTTACCTGGGAAGAGGCTCAGGATTTGCTCCGACCACCTCCTACTGTTAAGCCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGCGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATCTTTGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTGCTAATTCCCCCCAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTCTTCATGTGCTGCTCCTAATGAATTGAACCCAAGGGAACTGGATAATCTTCTAAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACAAAGAATCTTCAGGACTGGATGCCTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGGTTACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCCTGCATTGTCTGTATCCAGCCTCCAAGTGGAAAGGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGTCAATCGGAACGTGAAGCTGAGATTGCTCAGAGAAATCAGTTAGCGTGGGGAACGAAGGAAGAATCAGAAGTGGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAACGAAGTAAGGGCGCCAATTGAGTTGGAGCCAAGGACTGAAGACCATGTTGCGGAAGCTGGCAAGGGACAATTAGACTTGAATTGTCAACCTGATCGAGAAGAAGCGCAAGCTGGGCCAAATAATGTGAGCATGACAACTCTTCTTGAAGAGGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATCTCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGAAAGTGAGGGAAGACACAACGAGGATTGTGGTACGCCTTCAGTTATTCATGAGCAGGATAGCAGTCATGAAGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCATGA 2721 0.4498 MESKNCMNVACATLTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHPNDSGWRKCTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIASNEKPNGSGTSKVIDASAQQCTTLANQLNVRGMQGGHYAENDGLRCWFKPHKVETDGLSTEMKPEVLPSVGELGSTLISQFHFESNGSSKASKAESCKVDSEMRDIYDSLAQTNLSMTLATPLGNSNPFHNSVVDEREQSKASSLLLGSRSRHLLPKPPRSTSGTGLEVNAGMISQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPVLSGYSGLLQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDMPESRKREGLPLPPLLVPEKKRTRNIGSKSKRMLIDSQDAMELKLTWEEAQDLLRPPPTVKPSIVMIEDQVFEAYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRSSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDKESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLAWGTKEESEVDSTSRHLTPVDGLENEVRAPIELEPRTEDHVAEAGKGQLDLNCQPDREEAQAGPNNVSMTTLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNEDCGTPSVIHEQDSSHEENSGQDKDQNNSLS* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0729 906 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Pvu10g0729 906 SMART B3_2 321 421 IPR003340 GO:0003677
Pvu10g0729 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 858 - -
Pvu10g0729 906 Gene3D - 299 426 IPR015300 -
Pvu10g0729 906 CDD B3_DNA 319 420 IPR003340 GO:0003677
Pvu10g0729 906 MobiDBLite consensus disorder prediction 761 783 - -
Pvu10g0729 906 MobiDBLite consensus disorder prediction 870 898 - -
Pvu10g0729 906 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Pvu10g0729 906 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 858 - -
Pvu10g0729 906 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Pvu10g0729 906 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Pvu10g0729 906 Gene3D - 589 645 - -
Pvu10g0729 906 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Pvu10g0729 906 MobiDBLite consensus disorder prediction 853 869 - -
Pvu10g0729 906 MobiDBLite consensus disorder prediction 853 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0729 Pvu-Chr10 18184286 18192429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0729 1 875 B3 DNA Binding Superfamily AT4G32010 49.101 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu10g0729 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0729 - - vun:114166687 1745.71