Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0704 ATGGCTCTTTTTCCTGAAACGTTCACAACCCGAAAACGACGACCCGGGGCGTCGTTTAACACTTCCAAGCTAAGCGACCTTAACCTTCTCTTCTCTCTGCTTCAACTCACGGATCAGATATGTTCTATAAACCTAAACAGTGCCGCCAATTTTCTCTTCAACCGCGCTTCATGTTCCGCCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTTGAAGACCTGATTCGCTCTTCCAACGCGAATCCCAATTCCGTTGTGTTTCCCCCCTCTCTCTTCCTCTGCCTCGAAGAAATGTACATCGTTCTACACAAAATCAAAACGTTGATTGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAAATCGAAACCGTCGCCGATACCTTCCACAGGTTCACCGGAGAACTCTCCACGCTTCTCGACGTCTTCCCTCTCCGGGAACTCACCCTAAACGATGACGTTCGGGACATCGTTCTCCTCATCAGAAAACAGTGCTCCGAATCCAGGCCGTTCATCGGAACAGAACAAATTAACCTTCGGTGCGACGTCGTTTCCGTCCTCGACCGGATCAAGAACGAGATCGTTCCTGATCAAGCGAATCTTTCGTCGATTTTCGAGAAACTGGAGATTCGTGACGCTTCGAGCTGCAGAGCGGAGATTGAGAACTTGGAGGAGGAGATTCACAACCGGAGCGAGGAGCAATCGAAAGCGGATCTCGTAGCGTTGATCGGCCTCGTTCGTTTCGCCAAGTGCGTTCTCTTCGGTGCGTCAACGCCTTCGCCGAGGAGCGTGAGTCTACAACGGAGTCGGTCGTTGGAGTTCGCAGTCCCGGCAGATTACCGATGCCCGATAAGCCTAGAGCTCATGCAAGACCCTGTCGTGGTGGCGACGGGACAGACGTACGATCGTGTATCGATCAAACTGTGGATGGATTCAGGACACAACACGTGTCCAAAAACGGGTCAAACTCTATCACACACCGACCTAATCCCCAATCGCGTCCTGAGGAACATGATAGCGACGTGGTGTCGCGAGCAGAAAATCCCCTTCGAAGTGGAAACGGTTACAGGGAAACTCAACGGCGGAGTATCCAACAAGGCCGCGTTAGAAGCCACGCGTATGACGGTGTCGTTTTTGGTGAACAAGCTTAAGGGAAACGACAACGTTCCTTTGTCCGTCGAAGTCACAAACGGTGCAGTTTACGAGCTTCGGGTTTTAGCGAAAACAGATTCAGATAGCCGAGCCTGTATTGCCGAAGCGGGGGCGATTCCGCTTTTGGTTCGGTTTCTCGATGTGGGAATGGAGAACCCGAGCCTACAGGTTAACGCCGTGACGACGATATTGAATTTGTCTATTCTGGAAGCGAACAAGACGAGGATAATGGATACTGATGGCGCGTTAAACGGCGTTGCGGAGGTTTTGCTTTCGGGTGCTTCGTGGGAGGCGAAGGCCAACGCGGCAGCGACGGTGTTTAGTTTATCGGGTGTACCCGCGCACAGGAAGAGGCTCGGTAGGAAGACAGGTGTCATTAGCGGGTTGGTGAGTTTGGCGCGGAGTGGGCCCGAGGGGGCGAGGCGAGACGCGCTGGCGGCGATACTAAACCTCGCGGCGGACAGGGAGACGGTGGCGCGCCTGGTGGAGGGGGGCGTGGTGGCTATGGCTTCGGAGATCATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCGGTGGTCAAGAGGGGTGGGTTGGTAGCAGTGGCGGAGGCGTACGCCGGGATTAAACGGCTGGGGGCGGTTCTCAGGGAGGGGTCGGAGAGAGCAAGGGAGAGTGCGGCGGCGACGCTGGTCACCATGTGTCGGAAGGGGGGATCGGAGGTTGTGGCTGAGTTAGCGGCAGTTCCCGGAGTGGAGAGGGTCATCTGGGAGCTCATGGCCGTGGGGAGTGCTAGGGGGCGACGGAAGGCGGCTACGCTCTTGAGGATTTTGCGGCGGTGGGCGGCGGGGCTAGATGGCGGAGAGAGTGAAGGGGTTTCAACAACCACTACGGTCATTTCCTCAACCACTTACATAACACCGTAA 2070 0.5527 MALFPETFTTRKRRPGASFNTSKLSDLNLLFSLLQLTDQICSINLNSAANFLFNRASCSAIRKTQLLGVVFEDLIRSSNANPNSVVFPPSLFLCLEEMYIVLHKIKTLIEDFSNGSKFNLLMQIETVADTFHRFTGELSTLLDVFPLRELTLNDDVRDIVLLIRKQCSESRPFIGTEQINLRCDVVSVLDRIKNEIVPDQANLSSIFEKLEIRDASSCRAEIENLEEEIHNRSEEQSKADLVALIGLVRFAKCVLFGASTPSPRSVSLQRSRSLEFAVPADYRCPISLELMQDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLSHTDLIPNRVLRNMIATWCREQKIPFEVETVTGKLNGGVSNKAALEATRMTVSFLVNKLKGNDNVPLSVEVTNGAVYELRVLAKTDSDSRACIAEAGAIPLLVRFLDVGMENPSLQVNAVTTILNLSILEANKTRIMDTDGALNGVAEVLLSGASWEAKANAAATVFSLSGVPAHRKRLGRKTGVISGLVSLARSGPEGARRDALAAILNLAADRETVARLVEGGVVAMASEIMAAMPEEGVTILEAVVKRGGLVAVAEAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGSARGRRKAATLLRILRRWAAGLDGGESEGVSTTTTVISSTTYITP* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0704 689 Pfam Armadillo/beta-catenin-like repeat 413 453 IPR000225 GO:0005515
Pvu10g0704 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Pvu10g0704 689 CDD RING-Ubox_PUB 282 324 IPR045210 -
Pvu10g0704 689 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Pvu10g0704 689 SMART arm_5 412 454 IPR000225 GO:0005515
Pvu10g0704 689 SMART arm_5 499 539 IPR000225 GO:0005515
Pvu10g0704 689 Coils Coil 215 235 - -
Pvu10g0704 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 467 IPR000225 GO:0005515
Pvu10g0704 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 17 676 - -
Pvu10g0704 689 SUPERFAMILY ARM repeat 378 659 IPR016024 -
Pvu10g0704 689 Gene3D - 361 585 IPR011989 -
Pvu10g0704 689 PANTHER U BOX DOMAIN-CONTAINING 17 676 - -
Pvu10g0704 689 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Pvu10g0704 689 SUPERFAMILY RING/U-box 268 351 - -
Pvu10g0704 689 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0704 Pvu-Chr10 16738391 16740460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0704 11 665 U-box Gene Family AT5G01830 55.723 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0704 - - gmx:100805405 1045.8