Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0651 ATGAGCCAATTCTTGAGGCAGTCATTAAATACCTCTTCAAAGAAGGGTGACCAAATACGAGTTCTTCCTTGCCTCCATGAGTATAACATGTCATGTGTGGACAAGTGGCTTAAAGAAATACATGGGGGGAAGGCCACACAGCTGCAGAGTTCCATGTACAGTAGATGGCTATCTAACAGGAACAACCAGACAAAGCCATCTACTATGTTGGCAAGTACTAAGCATTACAAGCCTCATGGTAGATTTATCACTGTCAACCAAATGAAAATAGTTTGTATCTTTCTAAAAGATAACGTGCAAGAAGGAGATGTTGAAGATGGGGAAGGTTAA 330 0.4091 MSQFLRQSLNTSSKKGDQIRVLPCLHEYNMSCVDKWLKEIHGGKATQLQSSMYSRWLSNRNNQTKPSTMLASTKHYKPHGRFITVNQMKIVCIFLKDNVQEGDVEDGEG* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0651 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 51 IPR013083 -
Pvu10g0651 109 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 15 42 - -
Pvu10g0651 109 SUPERFAMILY RING/U-box 14 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0651 Pvu-Chr10 11267384 11268339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0651 14 41 C3H Transcription Factor Family AT5G45290 64.286 3.78e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0651 - - pvu:PHAVU_010G062700g 228.794