Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0635 ATGCAACCAAGAACAAGTGTAGGAGATGGCAGTCGGGTATGTACCTCAAGTATACCTAGTAACTCTTGCGGTGGGTCTGAACAAGATGACCTAGACTCATTTCGTGATGTGTACATATGGGGTGAGGTTCTGTCAAATGGGGTTTCACCTGATGGGATAGCAACTCAAGTTCCTTCTCAGATAGATGTGTTGATTCCTAAGCCTTTAGAGTCAAATGTTATTCTAGATGTTTGCCACATTGCAACTGGTGCACACCACATTGCTGTAGTAACTAAGCAAGGACATGTTTTTACATGGGGAAAAGAATCAGGGGGAAGACTTGGTCATGGAATTGATAACGATTTTGTCTCCCCCCGTGAAGTTAAGTTTCTTGAAGATATTGATTTTGACTTTGTTGCATGTGGAGAGTATCACACAGGAGTTATATCTAAATGCTATGAACTTTATACATGGGGTGATGGAGCACATAATGTTGGACTTCTTGGACATGGTTCTGAGGCTAGCCATTGGATGCCAAAAATGGTCAATGGCCCTTTAGAAGGAGTTGAAGTTGTGTCTGTTGCATGTGGCACATGGCATTCGGCATTGGCTACCTCAGATGGAAAACTTTTTACCTTTGGTGATGGGGCATTCGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTGGTATCCAAAAGAAGTAGAACTTTTGAGTGGACTAAAGACTGTTAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATAGAGGTTGAATTTCCATCTGGTTCAAATGCTTCATCTGGGAAGCTTTTCACCTGGGGTGATGGTGATAAACATTGTTTGGGTCATGGAAACAAAGAAACATACCTTCAACCTACCTGTGTTGCTCCACTTGTGGAATATAATTTCCAGCAAGTTGCATGTGGGCACACAATGACTATTGCTCTCACTACATCTGGTCATATATTTGCCATGGGAGGCACAGAACATGGTCAATTAGGAAATCCTGTGTCCATTGGAAAAATACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAAACTGTTGAGGAAATATCATGTGGAGCACATCATGTCGTTGCCTTGACCAAAAAAGGTGAACTATATACATGGGGAATGGGTGCCAATGGAAGATTAGGGCATGGAGATGTAGAAGATAGGAAATCTCCTACATTGGTGATAGCCTTGAAAGATAGGACTATAGAAAACATCTCATGTGGCTCTAACTTTACATCGTGTATATGCATCCATAAATGGGTCTCTGGAGCTGATCAAGCTCTTTGCTCTGGTTGTCGACAAGCATTTGGTATAACAAGAAAAAGACATAATTGTCACCACTGTGGTTTGGTCTTTTGTCATGCTTGTAGTACTAAAAGGGCATTCAAAACAGCATTGACTGCAACACCAGAAAAACTTCATCGCGTGTGTGATAATTGTTATGTGAAGCTTAAAGTTTTTGATGAAAATGATTCTTCCAAGTTAGAAAAAAAGGCTACTACTACTCATAACTCCATAAATGAAAAGGAAAAATCAAACCAAGGAGCAATAGTAAGATCTGCAAGAACTCTCTTAACTCCTATAACTGAACCAGTGAAATACCTTGAAATAAAGAATAATAATCCTGAAAGTAATGATGATTCTACATCCTTTGTACGAGCTTCTCTAGTTCCATCTCTGGTGCAATTGAAAGATGTTGCATTTCCAAGTTCACTTAGTTCTTTTCAAAGTATTTTAAAGCCTATTATACCACCTAGTCCGCCACAAACTCCGCCACAAACTCCGCCGCGAACTCCGACCTCACATACCCTTTCGGGACCCGTATTCACAAACACAGTGAGACAAATCGCTCCTCGTCCTGCCAGTTCTAGATTTTTAGGAAGTCTTAACGAAAATTTAAGAAGGTCAAATACTATTTTGAATCAAGAAGTTTCAAAGTTACAGAAACAGATTCAAAGTTTAAGGGAAAAAAGTGACATGCAAGATCTGGAAATCAAGAGGCTTAACAAAAAGGCTACGGAAGCTTTTGCCCTTGCTGCAGTGGAATCTTCTAATCACAGAGTAACAAAAGAATTTGTTGAATCTACTGTGTTTCAGATGAAGGAAATGACTGACAATTTGCCTAGAGAAATTTCAGAAAGTCGGAATTTGAGAAATGTACTTATTCGAGTTAAAGATTTTCTTAAAAAAACTTCAGAATCTGAAATATGTTCATCACCAAAGTTGGAGATTAAGCCAAAAATTGCATCTGATATACCTCCCTCAAATAATGACTCTTCCAAATTACAAGCTGAAGAAAATGTGGATGCTACAGAAGCCAAACCTAGTGAAGATGAACTTGAAAAAAAAAGAAATAAATCAAAGTTGAACTCTATACAACAAAATAAACCTACTTCAGATACCAGCACTTCCAACATGCATGAACACGAACTAGATGAAAGGGTTCATGCCATAGAAGTTAACCATTGTGAAGATAGAGGAAACTCTCTCAGAGAAAGTGATGAACCAACAAAGTCAGAAATTGAACACCAAAATGCACCTCGTTCAATTTCCTCAGCTAGTGATGTTTCTGAAATGTCAGATGATAATAGAGTAGAGGAGAATGTTAAGGTTGCAGGAGTTGATGAATCTCAGGAACAAGAACATGTCTTTCAAAATTGTATTGGTTCGTATGCTTCTACTATTGGTAAAACAATGCCTTCAGAAAACTCCAACAAGGGTTCAAGATCTTCACGACACGGAAAACAGGGAGAAGTACAAGTTATTGAAAAATTTGATCGTGGAGTTTATGTGATTCTCATGTTACAGTCTGATGGTACCAAAAAATTTAAACGAGTTAAATTCAGTAAAAGAAGGTTCACTGAAAATCAAGCAGAAAAATGGTGGAACGTAAACAAAGGTAGGGTTCTTAGGAAATATAGTCCAACAGATAAAAGTATAACAATTGGTCCATCTAATGTCACATCACATGTTAAAGAAATTATTGAGACACCTCCTTCCTCTATAGTTTAG 3012 0.3871 MQPRTSVGDGSRVCTSSIPSNSCGGSEQDDLDSFRDVYIWGEVLSNGVSPDGIATQVPSQIDVLIPKPLESNVILDVCHIATGAHHIAVVTKQGHVFTWGKESGGRLGHGIDNDFVSPREVKFLEDIDFDFVACGEYHTGVISKCYELYTWGDGAHNVGLLGHGSEASHWMPKMVNGPLEGVEVVSVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVWYPKEVELLSGLKTVKVACGVWHTAAIIEVEFPSGSNASSGKLFTWGDGDKHCLGHGNKETYLQPTCVAPLVEYNFQQVACGHTMTIALTTSGHIFAMGGTEHGQLGNPVSIGKIPTLVQDKLLGETVEEISCGAHHVVALTKKGELYTWGMGANGRLGHGDVEDRKSPTLVIALKDRTIENISCGSNFTSCICIHKWVSGADQALCSGCRQAFGITRKRHNCHHCGLVFCHACSTKRAFKTALTATPEKLHRVCDNCYVKLKVFDENDSSKLEKKATTTHNSINEKEKSNQGAIVRSARTLLTPITEPVKYLEIKNNNPESNDDSTSFVRASLVPSLVQLKDVAFPSSLSSFQSILKPIIPPSPPQTPPQTPPRTPTSHTLSGPVFTNTVRQIAPRPASSRFLGSLNENLRRSNTILNQEVSKLQKQIQSLREKSDMQDLEIKRLNKKATEAFALAAVESSNHRVTKEFVESTVFQMKEMTDNLPREISESRNLRNVLIRVKDFLKKTSESEICSSPKLEIKPKIASDIPPSNNDSSKLQAEENVDATEAKPSEDELEKKRNKSKLNSIQQNKPTSDTSTSNMHEHELDERVHAIEVNHCEDRGNSLRESDEPTKSEIEHQNAPRSISSASDVSEMSDDNRVEENVKVAGVDESQEQEHVFQNCIGSYASTIGKTMPSENSNKGSRSSRHGKQGEVQVIEKFDRGVYVILMLQSDGTKKFKRVKFSKRRFTENQAEKWWNVNKGRVLRKYSPTDKSITIGPSNVTSHVKEIIETPPSSIV* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0635 1003 Coils Coil 630 671 - -
Pvu10g0635 1003 Gene3D - 17 257 IPR009091 -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Pvu10g0635 1003 SMART fyve_4 417 486 IPR000306 GO:0046872
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 581 598 - -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 262 311 IPR000408 -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 148 196 IPR000408 -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 366 415 IPR000408 -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Pvu10g0635 1003 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 1 28 - -
Pvu10g0635 1003 SUPERFAMILY FYVE/PHD zinc finger 419 486 IPR011011 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 747 807 - -
Pvu10g0635 1003 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Pvu10g0635 1003 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 895 917 - -
Pvu10g0635 1003 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 843 858 - -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Pvu10g0635 1003 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Pvu10g0635 1003 SUPERFAMILY RCC1/BLIP-II 35 420 IPR009091 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 824 864 - -
Pvu10g0635 1003 ProSiteProfiles BRX domain profile. 919 974 IPR013591 -
Pvu10g0635 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 490 IPR013083 -
Pvu10g0635 1003 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 765 980 - -
Pvu10g0635 1003 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 779 - -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 579 607 - -
Pvu10g0635 1003 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Pvu10g0635 1003 CDD FYVE_like_SF 429 481 - -
Pvu10g0635 1003 Gene3D - 258 431 IPR009091 -
Pvu10g0635 1003 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 779 - -
Pvu10g0635 1003 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 765 980 - -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Pvu10g0635 1003 Pfam Transcription factor regulating root and shoot growth via Pin3 920 973 IPR013591 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 765 788 - -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Pvu10g0635 1003 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Pvu10g0635 1003 MobiDBLite consensus disorder prediction 824 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0635 Pvu-Chr10 10054655 10059747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0635 918 973 Major Intrinsic Protein MIP AT1G31880 39.286 3.12e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0635 - - vra:106773411 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0894 8 8762584 8772471 Pvu10g0635 10 10054655 10059747 PCT