Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0623 ATGGGAGGAGAAGGAAGGGCGGCGATGAAGAAGAAGAAGAACGCGAAATCTGGGGGCTTCGAGTCACTCGGTCTGAGTCCGAATGTGTTCAGGGGAATCAAGCGCAAAGGTTACAAAGTCCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATTCTCTCTGGCTCCGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCAGCGTTTCTCGTCCCCATGATTCACCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTCATTCTGTCCCCCACTCGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCGCACTTCTCAGACCTTCGTGTGAGTTTGTTAGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAGTTGTCTCAGAGTCCTGATATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCGGAGGTTGATGACATGTCCTTGCGCAGCGTGGAGTACGTTGTTTTCGACGAGGCCGATTGTTTGTTTGGGATGGGTTTTGCTGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACTAAGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCATGAGGCAGGAGGAGAAGTACCCCGCCCTGCTCTACTTGGTCCGGGAACATATTGGTTCTGATGAACAGTCGTTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAATGTTTTGTTTCGCCAAGAGGGTATTGAACCGTCTGTATGTTATGGCGACATGGATCAGGATGCTCGCAAAATCCATGTATCGAAGTTTAGGTCTAGAAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTCGTCCATCGAGTTGGAAGGGTTGCAAGGGCTGGTCGAACTGGTACTGCTTATTCTTTTGTGACTCCCGAGGATATGGCTTACCTCTTGGATCTTCATTTATTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGTTCTTGCGGGATATAGATGGAGTATTGTCTAGATGTGACCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCCAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAACAGCACTTGCATTTTCTGAGCATCTGAAAAAGTTCAGGCCAAAACAAACCATTTTGGAAGCTGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCCGGGCAATGGGGTGATGTGATGAAAAGGAAAAGAGCCATCCATCAGAATGTTATAAATTTGGTTCATGAACAACAGCAGTCTAAGAATAATAAGGAAAAGGAGGAAATCGAATCAGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGCACTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAATAAATCAACATATGGAGGCCGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCAGCTGTCCTTGATCTAGTCGCAGATGATGGTGCTGGCATTCGGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGGAAGATAAAGACAGAGAGTGGTGCTAAAACGAAGGCCACCAAGACTGGTATGTACAAGAGGTGGAAAGAACGCTCACACGGTAAGATATCACTCAGAGGGACAAATGACGGTGATCGTCAGGAATCAACAAGTTTGGCAGGATCTTACAGAAGAGGTCGTGGGAATTTTAAAGGCAGCAACAAGCAGCATTCAATGCCCAATGCTCACGTGCGTTCAGAAATCAAAGACATGGATCAAATTCGAAAGGAAAGGCAGCAAAAGGCTAACAGGACTTCTTATATCAAGAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGTGGTAAAAATGGTAAAAGAAGAAAAAGCAAATAG 2349 0.4606 MGGEGRAAMKKKKNAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFSDLRVSLLVGGDSMESQFEELSQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTMRQEEKYPALLYLVREHIGSDEQSLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSKFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEFLRDIDGVLSRCDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWGDVMKRKRAIHQNVINLVHEQQQSKNNKEKEEIESEISPSMEKGRKARGTKRKPQSFKDEDHYISSIPINQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIRKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGMYKRWKERSHGKISLRGTNDGDRQESTSLAGSYRRGRGNFKGSNKQHSMPNAHVRSEIKDMDQIRKERQQKANRTSYIKSKSTKGKKFGKNGKSGKNGKRRKSK* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0623 782 SMART DBP10CT_2 624 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pvu10g0623 782 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 7 775 - -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 1 20 - -
Pvu10g0623 782 Gene3D - 4 225 IPR027417 -
Pvu10g0623 782 SMART helicmild6 275 356 IPR001650 -
Pvu10g0623 782 CDD DEADc_DDX54 18 223 - -
Pvu10g0623 782 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 775 - -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 684 782 - -
Pvu10g0623 782 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Pvu10g0623 782 Gene3D - 237 459 IPR027417 -
Pvu10g0623 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Pvu10g0623 782 SMART ultradead3 37 237 IPR014001 -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 730 752 - -
Pvu10g0623 782 CDD SF2_C_DEAD 244 365 - -
Pvu10g0623 782 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Pvu10g0623 782 Pfam DBP10CT (NUC160) domain 624 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Pvu10g0623 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 551 573 - -
Pvu10g0623 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 547 585 - -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 758 782 - -
Pvu10g0623 782 MobiDBLite consensus disorder prediction 1 17 - -
Pvu10g0623 782 Pfam Helicase conserved C-terminal domain 247 356 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0623 Pvu-Chr10 9883496 9888675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0623 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.458 1.96e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0623 K14808 - gmx:100806274 1340.48