Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0582 ATGGACTTTGGAGACGCCACCAACACCAACACCTTCACCCTCCACACCCCCACCAAAGAGGAAACCGGTAACAACATTCTTTGGTATTCATCATGGCTACAACAACCTACTAGTGTTGTTTCTACTTCTAATTCTAGCTACATTAGTTCACCACACCCCACCACGACGGCGGAGGATTACGCCGGCGGTGACCGCCGCCCAGTATACGGCAGCGAGGGGTGTCACGTGCATGGGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGAGACATTACTTTGAGGATCCTAATAACGGTGATGTTAGAAATAATAATAATAATAATAATATTGCTACTCTGGGGAAACCACCCGTATGTGTTGGTGATGGTGTTATTATTTCGGGGAACCGACACGTGGGCGGTGATGGTGTTATTACTCTGGGGAATCGACACGTGTACGGAAGTGATGGTGGTGCGGGTTATTTTTCAGAGGGTAATGATAAGAGAGCGAGGGGGTGTTATGGAGGAGCTGCGGCTGCAGGTGCCGGTGGTGGTGGCAGCGTGAAAACGGCGGCGTTTGGGACGGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGTTGGTGAATTCAAAAGAGTACCATAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCGCCTAAAGTTGTGGTGTTGGGTTTGGTGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGAAGTTGTAGGAGAAGATTAGCAGGGCATAATGAGAGAAGAAGAAAGAGCTCTCACCTTTCTGTTACAAGGAGTTCTAGACAAGGGTGCGCTCTCTCTCTTCTGTCATTTGGGAGCAGTGATAATTGGTCTTTTCATGCTGATCTCTCCACAAGATGCAGTGCAGCATTGCGTGAACTGATAGCAGAAAACCGTGCTGCCCTAATGACTAGACAACAACAACAGCAACAACACCAAGTTGTTTATGATAGAGATCACTGCCATGTTGTGCCCCACCATGATGATGCTGTGGATGAAGAAGAACAAGAGTTTGAGGAGATACAACCTGAGTCCAATTATTTTCCTCAACACATGTTTTCCCAGACACAATAA 1119 0.4817 MDFGDATNTNTFTLHTPTKEETGNNILWYSSWLQQPTSVVSTSNSSYISSPHPTTTAEDYAGGDRRPVYGSEGCHVHGDPHLTCLHLGKRHYFEDPNNGDVRNNNNNNNIATLGKPPVCVGDGVIISGNRHVGGDGVITLGNRHVYGSDGGAGYFSEGNDKRARGCYGGAAAAGAGGGGSVKTAAFGTVPRCQVEGCHVALVNSKEYHRRHRVCDMHSKAPKVVVLGLVQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRSSRQGCALSLLSFGSSDNWSFHADLSTRCSAALRELIAENRAALMTRQQQQQQHQVVYDRDHCHVVPHHDDAVDEEEQEFEEIQPESNYFPQHMFSQTQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0582 372 Gene3D - 185 253 IPR036893 GO:0003677|GO:0005634
Pvu10g0582 372 Pfam SBP domain 192 265 IPR004333 GO:0003677
Pvu10g0582 372 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Pvu10g0582 372 MobiDBLite consensus disorder prediction 44 64 - -
Pvu10g0582 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 23 352 - -
Pvu10g0582 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 352 IPR044817 GO:0003677
Pvu10g0582 372 SUPERFAMILY SBT domain 190 268 IPR036893 GO:0003677|GO:0005634
Pvu10g0582 372 Coils Coil 306 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0582 Pvu-Chr10 9081871 9084780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0582 189 289 SBP-box Gene Family AT2G42200 62.136 4.33e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu10g0582 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0582 - - pvu:PHAVU_010G056200g 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0582 10 9081871 9084780 Pvu10g0582 10 9081871 9084780 ECH
Pvu10g0582 10 9081871 9084780 Pvu8g0964 8 9737832 9738881 PCT