Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0580 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCCGCCGGAGCTTCCGACCAAACCCACCGTCAAATCTTCGACCACTACGCCTCACACTCGCTCATCCCCGACCACTTTCTTCACGCGCCAACACACTCCAACGCCACCACCGCCGCGGCCGCCACCGTCGACTACACCAACCACCACCACCACTTCAACCCGCAACCCCACCACCACCACCTCAACCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCTTCCACCTCCTACCCTCCAACCCCATCCATGCTCTCCCTTGACCCGCTGCCCCACGTCAACGCCGCCAACTGCGGCCCAGGGCCCGGACCCGGCCCAGGCGGACTCCTCCTTGTTCCGAAGTCTGAGGACGTCGGGCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGAGGTCGAACGTATTTCTCCTCCGAGGATGATTTCGTGAGCCGTCTCTACCGTCGGTCTCGGCCGGCGGAATCGGGTTCGGCGGCTTCCTCGAACTCGCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAAGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTTATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCACCTGACTCCGGAGCTCAGTCGTCGTCGGTGACGGTGGCGGTGTCACCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCACAAACCCTTCTACAAATTCAAGCTCACTGTTTTTCTCTAGCGGGTAG 993 0.5871 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSNATTAAAATVDYTNHHHHFNPQPHHHHLNHHHHPFFDPRAFHGASSTSYPPTPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSTNPSTNSSSLFFSSG* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0580 330 Pfam SBP domain 193 266 IPR004333 GO:0003677
Pvu10g0580 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 86 313 IPR044817 GO:0003677
Pvu10g0580 330 MobiDBLite consensus disorder prediction 271 330 - -
Pvu10g0580 330 ProSiteProfiles Zinc finger SBP-type profile. 190 267 IPR004333 GO:0003677
Pvu10g0580 330 MobiDBLite consensus disorder prediction 259 330 - -
Pvu10g0580 330 SUPERFAMILY SBT domain 191 270 IPR036893 GO:0003677|GO:0005634
Pvu10g0580 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 86 313 - -
Pvu10g0580 330 Gene3D - 183 254 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0580 Pvu-Chr10 8995761 8998939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0580 1 240 SBP-box Gene Family AT1G02065 44.574 4.07e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu10g0580 SBP 4.8e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0580 10 8995761 8998939 Pvu10g0580 10 8995761 8998939 ECH