Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0566 ATGGCTTCTTCTTCTTCTTCTTCATCTCTTGCAACAGACATCTACGACGTATTTGTCAGCTTCCGCGGTGAAGACACGCGCAACAGCTTCACTGGTTTTCTCTTTCAGGCTCTCGGTACAAAAGGCATCAATGTGTTCAAAGATGTTGAAGATCTCAAAAAGGGTGAATCCATTGCACCAGAGCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTGTTGTCTTCTCACAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTCGCAGAGATATGTAACTGCTTTGAAACTTCGCCAAGACGTGTTATTATACCTATTTTTTATGATGTTCGTCCTTCAGTGGTGCGCAAACAGAATGCATGTTATAAGAAAGCATTTGCAGAACACGAAAAGAGATTGAGAGAAGATGAAGTGAAGATGGAAGAAGTTCAGAGATGGAGACAAGCTCTCACACAAGTCGCCAATCTCTCTGGTTGGGATATCCGAAATAAGTTACAGTGTGAACAGATAGAAGAAATTGTTCAAAAGATAATAAAAATTTTGGGACCAAAATTGTCAAGACTTCCGAATGATGAACTGGTTGGAATAAAGTATCGGCCAGTTAATGATGTTCGAGTTGTTGGAATTAGTGGAACGGATGGTATTGGAAAGACAACTCTTGCTCGGGATTTATATGAAAGAATCTATCATCAGTATGATTTTGGTTGTTTTATTGATGATGTGAGCAATATTTATAGAGATAGTGGTTCATTAGGTGTACAAAAACAACTAATTTCCCAGTTTCTAAATGAGAAAAATCTTAAAATTTTTAATGCTATTGATGGAGCATATTGGGTGTGGAATAGACTGCACAAAGCAAGAACACTTATAGTTCTTGACAATGTTGATAAAGGTGAACAACTTAAGCTGCTTACAGGGAACAGAGATATACGTACATGCATAGGTGAAGGGAGCAAAATCATCATCATTTCTAGGAATGAACTTATATTGAAGACACATGGAGTGAATGATGTTTATGAAGTTCTGCCGTTGAGTAGGAAAAATGCTGCGCTGTTGTTTTGTAAAAATGCTTTCAAAGATGAAGTTAATTATAAATTGGACGATTACTTGAAGGTGGCATGTGAGCTACTTTCACATGCTACTTTCACATGTCATCCTTGGACAATTGAAACAATTGGATCATTTTTGTGTGGTCAAAATGTCTCACAGTGGAGAAGGTTATTGGATAATATAAAAAATGATAGTATGGAGAAGATTTTAAGCATCTATGGATTTGATTATGAAAATGACATACAAGCTTTGGTTGAGAAATCTCTAATAACATGTGAAGATGGGATCATTTATATGCAT 1356 0.3724 MASSSSSSSLATDIYDVFVSFRGEDTRNSFTGFLFQALGTKGINVFKDVEDLKKGESIAPELLQAIQASRLFIVVFSQNYASSTWCLRELAEICNCFETSPRRVIIPIFYDVRPSVVRKQNACYKKAFAEHEKRLREDEVKMEEVQRWRQALTQVANLSGWDIRNKLQCEQIEEIVQKIIKILGPKLSRLPNDELVGIKYRPVNDVRVVGISGTDGIGKTTLARDLYERIYHQYDFGCFIDDVSNIYRDSGSLGVQKQLISQFLNEKNLKIFNAIDGAYWVWNRLHKARTLIVLDNVDKGEQLKLLTGNRDIRTCIGEGSKIIIISRNELILKTHGVNDVYEVLPLSRKNAALLFCKNAFKDEVNYKLDDYLKVACELLSHATFTCHPWTIETIGSFLCGQNVSQWRRLLDNIKNDSMEKILSIYGFDYENDIQALVEKSLITCEDGIIYMH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0566 452 Pfam TIR domain 15 188 IPR000157 GO:0007165
Pvu10g0566 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 430 IPR027417 -
Pvu10g0566 452 SMART till_3 14 158 IPR000157 GO:0007165
Pvu10g0566 452 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 161 IPR035897 -
Pvu10g0566 452 PRINTS Disease resistance protein signature 208 223 - -
Pvu10g0566 452 PRINTS Disease resistance protein signature 284 298 - -
Pvu10g0566 452 ProSiteProfiles TIR domain profile. 13 183 IPR000157 GO:0007165
Pvu10g0566 452 PANTHER TMV RESISTANCE PROTEIN N-LIKE 13 201 - -
Pvu10g0566 452 Gene3D - 1 156 IPR035897 -
Pvu10g0566 452 Pfam NB-ARC domain 205 424 IPR002182 GO:0043531
Pvu10g0566 452 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 13 201 - -
Pvu10g0566 452 Gene3D - 165 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0566 Pvu-Chr10 8624322 8626384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0566 15 443 WRKY Transcription Factor Family AT4G12020 24.894 5.93e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0566 - - pvu:PHAVU_010G054600g 893.264