Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0565 ATGGCTTCTATCCAATACACCTCTTCTTCTTCTTCTCTTCCAACTCACATCTACGACGTATTTGTCAGCTTCCGCGGTGAAAACACGCTCAACAACTTCACTGCTTTTCTCTTTCAGGCTCTTCGTACAAAAGGCATCAATGTGTTCAAAGATGATGAAGATCTCAAAAAGGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGCCTCTCTACTTTTCGTTGTTGTCTTCTCACAGAACTATGCTTCCTTCACCTGGTACTTGCGTGAACTGGCGGAGATATGTAACTGCGTTGAAAGATGTGTTATTATACTTATCTTTTATGATGTTGATCCTTTGGTGAGATTAAGAGAAGATGAAGTGAAGATGGAGGAAGTTCAGAGATGGAGACCAGCTTTCACACAAGTGGCCGATCTCTCTGGTTGGGATATCCAAAACAAGATTCATCACATTTTTGACAATGTTGATCAAGGTGAACAACTTAAGTTGTTCACACGGAACAAAGATATACGTAGATGCATAGGTGGAGGGAGCAGAATCATCATAATCTCAATGGATGAACATATAGTGAAGACACATGGAGTGGATGATGTTTATCAAGTCCAGCCGTTGGGTGAAAAAAATGCTATACAATTGTTTTGTAGAAATGCTTTCAAAGTTAATTATATATTGGGCGATTATGAAGAGTTGGCATATGAGGTACTTTCACATGCTGAAGGCCATCCCTTGGCAATTGAAAGAAGTGCATTGGGTAAGCTAAGATATAATAAAGATAGAAATATTATGAATGTTTCACGAATAAGTTTTGATCAGTTGAAAGAAGAAGAAAAAGAAATATTTCTTGATATTGCATGCTTCCTCCAAGTCGAAGAAGGTTCTATGATTCATTTTGACAAAACTGTGGAGGAAATTTTAAGCATCCGTGGATTTGATTATGAAAATGGCATACTAGCTCTGATCGAAAAATCTCTAATAACATGTGAGAATGAGAATATTTATATGCATGCGTTGTTGATGGATCTGGGACACAGTATTGCAACTGAAAATCTTGAAGTCATATATATTGAACATAATTTTCTTTCGGGGACTCTAAGTGCAGAAGGTCTATCGAAAATTAGATACCTTAACTTGCTTAGTCTTGATGGTGTGAACTTTTCAGGAAGTCTCAATCATCTTTCGAATGAACTAATGTATCTTAGTTGGAGAAAATATCTTTTTAAATCTTTGCCTCAAAGTTTTCATCCGGAAAAACTAGTTGAGTTACAACTTGATGAGAGTAGCATTAAACGATTATGGAAAGGTGCAAAGGTAGTAGAGGCCCTAAAACTTGAAGAGATAAAACTTATAGGATGCATAAAGCTCAAAAAAATCGATCCATCGATTGGTCTTTTGAGAAAGCTTACTTTCTTGAATTTGAAAAACTGCAAAAGCCTGGGAAACAATTTTACTACACTTCCCAACCTCAAGAACCTTTCCAAATTGTATTGTTTAAACTTACAACATTGCAAGCAATTAAAATGGTTGCTTAATCTCCCTACGCAAACCAACTTGCTCTCAATAATTTTGAAGCGGCAATCCTCATATTTCAAAGATGAAAATGTTGTAGGATTAATAATTTACAATTGGCCAAAATTAGTTGAGAGGGAACAATGTAGTAGCATGATTTTTTCGTGGATGATACATTCTTACGAGGCAATATGCTTAAAAGTCAGGTATCGTACTTATAGGTGTCCAACTTTTGAAAGTGTTATCCCAAGAAGTGAAATACCGAGGTGGTTCAACAATCAGTTTGTGAGCATGGACAATTCAATAAAAAATTATGCCTCTCCTGTTCAGCATGACTATAGTTGTATTGGTGTTATGTGTTGTGCAATATTCCACATGGGCAACGAAAAGGAGAAGACTTTTAACACATTCATTCATAAAGCTAGAATTCCTCCAATCAATTTGAGAAAAGATCTAGTCATTGACAAGTCAGATCATATGTGGCTATTTTATTTGGATGATAAAGAGTTTCGTAGAAGTGCTTATGGTTGCAGATGGAACGAACATTATAAGTATGTTATTACAAAATTGATCACGGACTGGAGTTCATTCACAAATAGAAAATCAATATGTGAAGGTGTATGTGAAGAAATATGGATATCATTGGATATATGA 2166 0.361 MASIQYTSSSSSLPTHIYDVFVSFRGENTLNNFTAFLFQALRTKGINVFKDDEDLKKGESIAPELLQAIQASLLFVVVFSQNYASFTWYLRELAEICNCVERCVIILIFYDVDPLVRLREDEVKMEEVQRWRPAFTQVADLSGWDIQNKIHHIFDNVDQGEQLKLFTRNKDIRRCIGGGSRIIIISMDEHIVKTHGVDDVYQVQPLGEKNAIQLFCRNAFKVNYILGDYEELAYEVLSHAEGHPLAIERSALGKLRYNKDRNIMNVSRISFDQLKEEEKEIFLDIACFLQVEEGSMIHFDKTVEEILSIRGFDYENGILALIEKSLITCENENIYMHALLMDLGHSIATENLEVIYIEHNFLSGTLSAEGLSKIRYLNLLSLDGVNFSGSLNHLSNELMYLSWRKYLFKSLPQSFHPEKLVELQLDESSIKRLWKGAKVVEALKLEEIKLIGCIKLKKIDPSIGLLRKLTFLNLKNCKSLGNNFTTLPNLKNLSKLYCLNLQHCKQLKWLLNLPTQTNLLSIILKRQSSYFKDENVVGLIIYNWPKLVEREQCSSMIFSWMIHSYEAICLKVRYRTYRCPTFESVIPRSEIPRWFNNQFVSMDNSIKNYASPVQHDYSCIGVMCCAIFHMGNEKEKTFNTFIHKARIPPINLRKDLVIDKSDHMWLFYLDDKEFRRSAYGCRWNEHYKYVITKLITDWSSFTNRKSICEGVCEEIWISLDI* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0565 721 ProSiteProfiles TIR domain profile. 16 161 IPR000157 GO:0007165
Pvu10g0565 721 Pfam TIR domain 18 148 IPR000157 GO:0007165
Pvu10g0565 721 Gene3D Ribonuclease Inhibitor 341 534 IPR032675 -
Pvu10g0565 721 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 144 IPR035897 -
Pvu10g0565 721 SMART till_3 17 141 IPR000157 GO:0007165
Pvu10g0565 721 Gene3D - 17 161 IPR035897 -
Pvu10g0565 721 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 152 350 - -
Pvu10g0565 721 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 118 - -
Pvu10g0565 721 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 361 508 - -
Pvu10g0565 721 SUPERFAMILY L domain-like 351 524 - -
Pvu10g0565 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 285 IPR027417 -
Pvu10g0565 721 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 152 350 IPR044974 GO:0006952
Pvu10g0565 721 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 118 IPR044974 GO:0006952
Pvu10g0565 721 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 361 508 IPR044974 GO:0006952
Pvu10g0565 721 SUPERFAMILY "Winged helix" DNA-binding domain 262 351 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0565 Pvu-Chr10 8613084 8616535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0565 177 494 WRKY Transcription Factor Family AT5G45050 27.833 3.40e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0565 - - pvu:PHAVU_010G054500g 1436.01