Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0564 ATGACTTCTTCTTCTTCTTCTTCTTCTTCATCTCTTGCAACAGACACCTACGACGTATTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAGCTTCATTGGTTTTCTCTTTCAGGCTCTCGGTACAAAAGGCATCAATGTGTTCAAAGATGTTGAAGATCTCAAAAAGGGTGAATCCATTGCACCCGAACTACTGCAAGCCATTCAAGCCTCTCAAGTTTTCATTATTGTCTTCTCAGAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTGGCGGAGATACGTAACTGCGATGAAAGACGTGTTATTATACCTATCTTTTATGATGTTGATCCTTCGGTGGTGCGCAAACAGAGTGGATCTTATGAGAAAGCATTTGCAGAATACGAAAAGAGATTCAGAGAAGATGAAGTGAAGATGGAGGAAGTTCAGAGATGGAGACAAGCTCTCACACAAGTCGCCAATCTCTCTGGTTGGGATATCCGAAACAAGTTACACTGTGAACAGATTGAAGAAATTGTTGAAAGGATAATAAAAATTTTGGGACCAAAATTGTCAAGACTTCCTAAAGATGAACTGGTTGGAATAGAGTTTCGGGTTAAAGAATTAACAAATCTTCTGCATTTAGAGTCAGTTAATGATGTTCGAGTTATTGGAATTAGTGGAAGGGATGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATATGAAAGAATCTCTCATCAGTATGATTTTCGTTGTTTTATTGATGATATGAGCAATATTTATGGAGATACTGGTTCATTAGGCGTACAAAAGCAGCTAATTTCCCAGTTTCTAAATGAGAAAAATCTTAAAATTTTTAATGCTATTGATGGAGCATATTGGGTGTGGAATAGACTGCACAAAGCAAGAGCACTTATAGTTCTTGACAATGTTGATAAAGGTGAACAACTTAAGCTGTTTACAGGAACAGAGATATACGTACATGCATAG 978 0.3896 MTSSSSSSSSSLATDTYDVFVSFRGEDTRNSFIGFLFQALGTKGINVFKDVEDLKKGESIAPELLQAIQASQVFIIVFSENYASSTWCLRELAEIRNCDERRVIIPIFYDVDPSVVRKQSGSYEKAFAEYEKRFREDEVKMEEVQRWRQALTQVANLSGWDIRNKLHCEQIEEIVERIIKILGPKLSRLPKDELVGIEFRVKELTNLLHLESVNDVRVIGISGRDGIGKTTLARALYERISHQYDFRCFIDDMSNIYGDTGSLGVQKQLISQFLNEKNLKIFNAIDGAYWVWNRLHKARALIVLDNVDKGEQLKLFTGTEIYVHA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0564 325 PANTHER TMV RESISTANCE PROTEIN N-LIKE 12 182 - -
Pvu10g0564 325 SMART till_3 16 157 IPR000157 GO:0007165
Pvu10g0564 325 Gene3D - 197 322 IPR027417 -
Pvu10g0564 325 Gene3D - 12 187 IPR035897 -
Pvu10g0564 325 ProSiteProfiles TIR domain profile. 15 182 IPR000157 GO:0007165
Pvu10g0564 325 PRINTS Disease resistance protein signature 218 233 - -
Pvu10g0564 325 PRINTS Disease resistance protein signature 294 308 - -
Pvu10g0564 325 Pfam TIR domain 17 187 IPR000157 GO:0007165
Pvu10g0564 325 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 160 IPR035897 -
Pvu10g0564 325 Pfam NB-ARC domain 203 313 IPR002182 GO:0043531
Pvu10g0564 325 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 12 182 - -
Pvu10g0564 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0564 Pvu-Chr10 8600367 8602193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0564 13 322 WRKY Transcription Factor Family AT4G12020 28.296 5.02e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0564 - - pvu:PHAVU_010G054600g 521.931