Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0562 ATGCCTTCTAACGCCATCATCCAATGCACCTCTTCTTCTTCATCTCCTGCAACTCACATCTACGACGTCTTTGTCAGCTTCCGCGGTGAAGACACGCGCAACAACTTCACTGATTTTCTCTTTCATGCTCTCCGTACAAAAGCCATCCATGTCTTCAAAGATCATCAAGATCTCGAAAAAGGTAAATCCATTGCACCCGACCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTGTTGTCTTCTCAGAGAGCTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCGGAGATATGTAACTGCTTTGAAACTTTGCCAAGACGTGTTATTATACCTATTTTTTATGATGTTCGTCCTTCGGTGGTGCGCAAACAGAGTGGATGTTACGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAGAGAAGATGAAGTGAAAATGGAGGAAGTTCAGAGATGGAGACAAGCTCTCACACAAGTCGCCAATCTCTCTGGTTGGGATATCCGAAACAAGTCACAGTCTGAACAGATTGGAGAAATCGTTCAAACCGTAATAAATATTTTGGGTCCCAAAATGTCAAAACTTCCGAAGGATGAATTGGTTGGGATAGAATCTCGGGTTGAAGAATTAACAAATCTTCTACAGTTAGATTTAGTTAATGATGTTCGAGTTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATACGAAAGAATCTGTCATCAATATGATTTTCATTGTTTTATTGATGATGTAAGCAAAATTTATAGAGATTCTAGTTCACTAGGTGTTCAGAAGGAGCTAATTACTCGGTGTCTAAGTGAGAAAAATCTTGAAATTTGTAATGCTATTGATGGAACATATTTGGTGTGGACTAGGCTGCACAATGCAAGAACACTTCTAGTTCTTGACAATGTTGATCAATGTGAACAACTTAAGCTATTCACAGGGAACAGAGATATACGTAGATGTGTAGGTGGAGGGAGTAGAATCATCATAATTTCAAGGGATGAACATATATTGAAGACACATGGAGTGGATGATGTTTATCAAGTTCAGCTCTTGAGTTGGGAAAATGCTGTGCAATTGTTTTGTAGAAATGCTTTCAAAGTTAATTATATATTGGACGATTATGAAGAGTTGGCACGTGAGGTACTTTCACATGCTCAAGGTCATCCCTTGGGAATTGAAGTAATTGGATCTTCTTTGTTTGGTCGAAATGTCTCACAATGGAGAAGTGCATTGGGTAGGCTAAGATATAGTAAAGATAGAAATATTATGAATGTTTTACGTATAAGTTTTGATCAGTTGGAAGAGGAAGAAAAAGAAATATTTCTTGATATTGCATGTTTCCTTCATAATCACTTCTATTATAATGAAATTTTAAGCATCCGTGGATTTGATTATGAAAATGGCATATCAGCTCTCATTGAGAAATCTCTCATAACATGTGAATATGGGGATATTTATATGCACAGGTTGTTGATGGATTTGGGACAAAGTATTGTTAGAGAAAAATCACCTAAGGAGCCTTTAAAGTGGAGTAGGTTATGGGATTGCAAAGATTTCGAGAAAGCTATGTTAGACAATGAGGCATCTGAAAATCTTGAAGTCATATATATTGAATGTGATTTGCTTTTGGGGACCGTGAGGGCAGATGGTCTATCGAAAATTAGACACCTTAAGTTGCTTAAACTTGAAGATGTGAATTTTTCAGGCAATCTCAATCATCTTTCGAATGAACTAGCATATCTTAATTGGAAGGAATATCCTTTTAAATGTTTGCCTCAAAGTTTTCAGCCAATAAAACTAGTTGAGTTATATCTTGTTGGGAGCAGTATTAAACGACTATGGGAAGGCACAAAGCCATTGCACAACTTGAAGCTTTTGGATCTCTCTTACTCCGAAGATTTAGTTGAGATGCCAGATGTTAGAGAGGCCCTAAATATTGAAAAGATAAAACTTAAAGGATGTATAAAGCTCCCAAAAATCAATCCATCAATCGGTCTTTTGAAAAAGCTTTCTTTGTTGAATTTGAGAAACTGCAAAAACCTGGTAAGCTTACCCAATACCATATTGGGCCTGAATTCTCTTGAATATATGGATGTCTCTGGATGTTCAAAACTTTTACAAAGAGACTTAGTCAGCTATTTATTGCCCTCATCTACTTTCCCTTCTTCTCTCACTTGTTTGCGTGAACTCAATCTAAGCTTTTGTAACTTAGTTCGAATCCCTGATGCCATTGGAAAGTTAAGTTGCCTAGAACACCTAAATTTGGAGGGAAACAATTTTACCACACTTCCCAACCTCGATAACCTTTTCAGACTGTATCATTTAAACTTACAACATTGCAAGCGATTCAAATACATTCCTGTTCTCCCTTCGCAAACTGAATTTCCCTCAGAAACTTGCAAACTTCCACTACCATATTTGACACATGAAGATCTGGTAGGACTAATCCTTTATAACTGCCCAGAATTAGTTGAGAGGGAACACTGTAGTAGCATGGTTTTTTCGTGGATGATACAAATTTTTCAGTCTTACGAGGTGAGGTGCTCAAGAAACACGTGTAGTCTCAAATTACGTCCAAATATTGCATGTGTTATCCCAGGAAGTGAAATACCGAGGTGGTTCAACAATCAGTTTGGGAGCATGGACAATTCAATAAGGATTGATACCTCTCCTGTTATGCATGACAATAACTGGATTGGTGTAATGTGTTGTGCAATATTTCACATGGACATTGAAAGAGATATGACTGGTTATAGATACATAGATCGTAGTGCTAGAATTCCACCAGTCGATTTGAGGAGCGATCTAGTCATTGACCATTCAGATCATATGTGGCTATTTTATTTGTCTCATCAAGATTTTGGTGAACGACGTTATGATTGCAGATGGTACACATCTTATAATGGGGTTATTAGTGTGGAATTTACAAAACTGATGATGGACACGGCCGAATTCGAGAAGGGAGAACACCAATATGTTAAGGTGTATGTGAAGAAATATGGGTATCGATGGGTATATGAGCAAGATCGACAACTACCAAACTCAGTGGATGGAAGCTACTGTACGAGATATCGAAAGAAGCTGGAATTAGTGTTTTATGGATTTACAACTGCTCGATTATAA 3159 0.3808 MPSNAIIQCTSSSSSPATHIYDVFVSFRGEDTRNNFTDFLFHALRTKAIHVFKDHQDLEKGKSIAPDLLQAIQASRLFIVVFSESYASSTWCLRELAEICNCFETLPRRVIIPIFYDVRPSVVRKQSGCYEKAFAEHEKRFREDEVKMEEVQRWRQALTQVANLSGWDIRNKSQSEQIGEIVQTVINILGPKMSKLPKDELVGIESRVEELTNLLQLDLVNDVRVVGISGMGGIGKTTLARALYERICHQYDFHCFIDDVSKIYRDSSSLGVQKELITRCLSEKNLEICNAIDGTYLVWTRLHNARTLLVLDNVDQCEQLKLFTGNRDIRRCVGGGSRIIIISRDEHILKTHGVDDVYQVQLLSWENAVQLFCRNAFKVNYILDDYEELAREVLSHAQGHPLGIEVIGSSLFGRNVSQWRSALGRLRYSKDRNIMNVLRISFDQLEEEEKEIFLDIACFLHNHFYYNEILSIRGFDYENGISALIEKSLITCEYGDIYMHRLLMDLGQSIVREKSPKEPLKWSRLWDCKDFEKAMLDNEASENLEVIYIECDLLLGTVRADGLSKIRHLKLLKLEDVNFSGNLNHLSNELAYLNWKEYPFKCLPQSFQPIKLVELYLVGSSIKRLWEGTKPLHNLKLLDLSYSEDLVEMPDVREALNIEKIKLKGCIKLPKINPSIGLLKKLSLLNLRNCKNLVSLPNTILGLNSLEYMDVSGCSKLLQRDLVSYLLPSSTFPSSLTCLRELNLSFCNLVRIPDAIGKLSCLEHLNLEGNNFTTLPNLDNLFRLYHLNLQHCKRFKYIPVLPSQTEFPSETCKLPLPYLTHEDLVGLILYNCPELVEREHCSSMVFSWMIQIFQSYEVRCSRNTCSLKLRPNIACVIPGSEIPRWFNNQFGSMDNSIRIDTSPVMHDNNWIGVMCCAIFHMDIERDMTGYRYIDRSARIPPVDLRSDLVIDHSDHMWLFYLSHQDFGERRYDCRWYTSYNGVISVEFTKLMMDTAEFEKGEHQYVKVYVKKYGYRWVYEQDRQLPNSVDGSYCTRYRKKLELVFYGFTTARL* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0562 1052 Gene3D Ribonuclease Inhibitor 723 874 IPR032675 -
Pvu10g0562 1052 PRINTS Disease resistance protein signature 225 240 - -
Pvu10g0562 1052 PRINTS Disease resistance protein signature 301 315 - -
Pvu10g0562 1052 PRINTS Disease resistance protein signature 397 411 - -
Pvu10g0562 1052 PRINTS Disease resistance protein signature 630 646 - -
Pvu10g0562 1052 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 167 IPR035897 -
Pvu10g0562 1052 SUPERFAMILY "Winged helix" DNA-binding domain 433 531 IPR036390 -
Pvu10g0562 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 456 IPR027417 -
Pvu10g0562 1052 SMART till_3 20 164 IPR000157 GO:0007165
Pvu10g0562 1052 ProSiteProfiles Leucine-rich repeat profile. 761 782 IPR001611 GO:0005515
Pvu10g0562 1052 Gene3D - 193 356 IPR027417 -
Pvu10g0562 1052 SMART LRR_typ_2 759 784 IPR003591 -
Pvu10g0562 1052 SMART LRR_typ_2 736 758 IPR003591 -
Pvu10g0562 1052 ProSiteProfiles TIR domain profile. 19 189 IPR000157 GO:0007165
Pvu10g0562 1052 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 727 IPR044974 GO:0006952
Pvu10g0562 1052 Pfam C-JID domain 877 1022 IPR045344 -
Pvu10g0562 1052 Pfam TIR domain 21 199 IPR000157 GO:0007165
Pvu10g0562 1052 Gene3D Ribonuclease Inhibitor 538 722 IPR032675 -
Pvu10g0562 1052 SUPERFAMILY L domain-like 551 885 - -
Pvu10g0562 1052 Pfam NB-ARC domain 207 427 IPR002182 GO:0043531
Pvu10g0562 1052 Gene3D - 18 192 IPR035897 -
Pvu10g0562 1052 Gene3D - 363 446 IPR042197 -
Pvu10g0562 1052 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 22 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0562 Pvu-Chr10 8568461 8574233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0562 21 799 WRKY Transcription Factor Family AT4G12020 29.016 3.24e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0562 - - pvu:PHAVU_010G055100g 1330.85