Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0560 ATGAGAAAACGTATCAGTATGGAAAGTGATGCTGACTTCTTCAATTCCTCTGCCACATCCTCCTCTACTTCCACTTCCACTTCTACCACCACCACCACCACAACCCCTTCGATCTTCATTGACACCAACACTTCCAGCACATCATCATCATCATCATCATCTTTAACACCCTCCACATCTTCTACCTCAAACTCAGATTCATGCATCAAAGAACACTCCAAAACCCCTCAAGATGACTCAACAACTCCTCTAACCTCGTTGGAAAATGAGAAGGATTCAAAGGGGTGCAAGAAGAGGCAGAGGGAGAATCCCAGCAATCAGAACTACCCTACTTATAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAGAAGTCAAGAATTTGGCTTGGAACATACCCTACAGCAGAAATGGCTGCTAGAGCTCATGATGTGGCTGCCTTAGCCATCAAGGGCCATTCTGCATACCTCAATTTCCCTGAATTGGCTCAAGAACTTCCAAGGCCAGCTACCACATCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACATCCTTTGAGCTGGTTAAGCATTGCCAAATTGAAGATGAAGAAGAAGGAGAAGAACCAAACCAAGCAGAACATGCCTCATCTTCAACTCTCTCAATGGACAACACACAAGAATCTTCAAGCTCTCACTCTACCAATGATGATGACACTTTGTTTGACCTACCAGATCTTTTCCCTGATCAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGGTAGTGGATTTAGGCTTGAGGAGTCACTTTTTTGGGAGAATTATTAG 852 0.4484 MRKRISMESDADFFNSSATSSSTSTSTSTTTTTTTPSIFIDTNTSSTSSSSSSSLTPSTSSTSNSDSCIKEHSKTPQDDSTTPLTSLENEKDSKGCKKRQRENPSNQNYPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPATTSPKDIQAAAAKAANTSFELVKHCQIEDEEEGEEPNQAEHASSSTLSMDNTQESSSSHSTNDDDTLFDLPDLFPDQLCSYSSSWHLCAVGSGFRLEESLFWENY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0560 283 MobiDBLite consensus disorder prediction 206 242 - -
Pvu10g0560 283 Pfam AP2 domain 110 161 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 MobiDBLite consensus disorder prediction 217 242 - -
Pvu10g0560 283 CDD AP2 112 170 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Pvu10g0560 283 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 283 - -
Pvu10g0560 283 PANTHER ETHYLENE RESPONSE FACTOR 39 283 - -
Pvu10g0560 283 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Pvu10g0560 283 MobiDBLite consensus disorder prediction 10 70 - -
Pvu10g0560 283 MobiDBLite consensus disorder prediction 1 113 - -
Pvu10g0560 283 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0560 Pvu-Chr10 8503366 8504597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0560 98 279 AP2-EREBP Transcription Factor Family AT2G44940 54.327 7.25e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu10g0560 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0560 - - gmx:100801129 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0560 10 8503366 8504597 Pvu10g0560 10 8503366 8504597 ECH