Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0558 ATGTTTGGGCGTGGTGGACCAAGGAAGAGTGATAATTCTAAATATTATGATATTCTTGGAGTTTCAAAGAATGCAACTGAAGATGAAATCAAGAAGTGCTACAGAAAGTTTAAAGAGTTAGGCCAAGCATATGAAGTTTTAGGTGATCCTGAGAAGAAAGAAATGTATGATCAGTATGGTGAAGATACCCTTAAGGAAGGGATGGGAGGAGGATGA 216 0.3796 MFGRGGPRKSDNSKYYDILGVSKNATEDEIKKCYRKFKELGQAYEVLGDPEKKEMYDQYGEDTLKEGMGGG* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0558 71 Gene3D DnaJ domain 37 71 IPR036869 -
Pvu10g0558 71 SMART dnaj_3 13 52 IPR001623 -
Pvu10g0558 71 ProSitePatterns Nt-dnaJ domain signature. 37 56 IPR018253 -
Pvu10g0558 71 PRINTS DnaJ domain signature 32 52 IPR001623 -
Pvu10g0558 71 PRINTS DnaJ domain signature 52 71 IPR001623 -
Pvu10g0558 71 SUPERFAMILY Chaperone J-domain 10 70 IPR036869 -
Pvu10g0558 71 Pfam DnaJ domain 14 36 IPR001623 -
Pvu10g0558 71 Gene3D DnaJ domain 7 36 IPR036869 -
Pvu10g0558 71 ProSiteProfiles dnaJ domain profile. 14 60 IPR001623 -
Pvu10g0558 71 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 70 IPR044713 GO:0006457|GO:0030544
Pvu10g0558 71 CDD DnaJ 15 49 IPR001623 -
Pvu10g0558 71 PANTHER OS12G0619100 PROTEIN 11 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0558 Pvu-Chr10 8471813 8473044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0558 5 64 C2H2 Transcription Factor Family AT1G74250 28.571 1.37e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0558 K09503 - pvu:PHAVU_010G053800g 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0558 10 8471813 8473044 Pvu10g0558 10 8471813 8473044 ECH