Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0552 ATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGACGAGGTGCTACTCAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTTAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTGATAGAGTTGCAGGCACAATTCGGGAACAGGTGGGCTAAGATTGCATCCTACTTGGCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCGAAAGAGGTTGGCCAGGATTCTGCACACATCAGCAACAACTGCCAAATCACAGAAAAACAAAACAAAAGTTCCTACCCTTCTTGATGTTCCTACTTTGGAGGCTCCAAAGTTCAGTTCATCATCAGAGGGAGAGTCATCATCAAAGCCTCAGTCATACTCACTACCCTTGATTGAGAATTCTGAGGTTATCAAAATGGTGTCTTTGCCAGAGCTCATCAAGTGTGAGTTACCTTGTTCTGACCCAATCCACATTGAACAAGAGTTTACCCTTTTTGAGAGCTATAAAATTAGTGAGCAGAATCAACAGATACCCTTTCCTCAGATGCCAGAACTCCAAAATGATCTCACATTCCCAGTGGGAAGCCAAGATGTCTTGGCCAGAATCGATGAGCCATGTTTCATTGAAGACTTTTGTGCTCTTGATGATGTATCTGAGTTTGGAATAGGTCTGCAACACCCCATTGGGTTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATCTCATGGACCCACCTGCAAGCCCTTCTAACCTATGA 948 0.4462 MHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLAGRTDNDVKNFWSSRRKRLARILHTSATTAKSQKNKTKVPTLLDVPTLEAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPELIKCELPCSDPIHIEQEFTLFESYKISEQNQQIPFPQMPELQNDLTFPVGSQDVLARIDEPCFIEDFCALDDVSEFGIGLQHPIGFPFFEPPGSCRIETRDTIDKFKSSDSFFDDFPMDMFDLMDPPASPSNL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0552 315 CDD SANT 69 108 IPR001005 -
Pvu10g0552 315 Gene3D - 68 137 - -
Pvu10g0552 315 CDD SANT 15 60 IPR001005 -
Pvu10g0552 315 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu10g0552 315 Gene3D - 13 65 - -
Pvu10g0552 315 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Pvu10g0552 315 SMART sant 66 114 IPR001005 -
Pvu10g0552 315 SMART sant 12 62 IPR001005 -
Pvu10g0552 315 PANTHER TRANSCRIPTION FACTOR DUO1 1 314 - -
Pvu10g0552 315 Pfam Myb-like DNA-binding domain 16 75 - -
Pvu10g0552 315 PANTHER TRANSCRIPTION FACTOR DUO1 1 314 - -
Pvu10g0552 315 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu10g0552 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Pvu10g0552 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0552 Pvu-Chr10 8369275 8371339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0552 1 312 MYB Transcription Factor Family AT3G60460 49.085 3.53e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g0552 Myb_DNA-bind_6 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0552 K09422 - gmx:100805384 499.975