Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu10g0546 | ATGCACAATCATCCTCCTAGAGTTCACTCCAACTTTCATGCTCGTAGAGACAACATACATGATCTTTCTTCTATGGCCTTTCTTCCGGAAGTTGTTTCATTCCGTTACCATCATATTCATATGCAATTGGACATTAACAACATGTCACATGAGGATCTTCTTACTTTAGGTCAACGGATTGACAACGTAAAGAGGGGTTCGTCAGAAGAAATTATTGCAAGACAAATGCGGACAAAAACTTATCTACTACCTAATAATTTGGAGGGCTCAACTTCTGAGGAACAAGAAATTAATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTATAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTGTGCAAATCAAAAGTATTGGTTATTGGATAG | 447 | 0.3714 | MHNHPPRVHSNFHARRDNIHDLSSMAFLPEVVSFRYHHIHMQLDINNMSHEDLLTLGQRIDNVKRGSSEEIIARQMRTKTYLLPNNLEGSTSEEQEINLCIICQDEYKNKEEIGILQCGHEYHADCIRRWLQEKNVCPLCKSKVLVIG* | 149 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu10g0546 | 148 | Pfam | Ring finger domain | 99 | 141 | IPR001841 | - | |
Pvu10g0546 | 148 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 145 | IPR013083 | - | |
Pvu10g0546 | 148 | SMART | ring_2 | 100 | 140 | IPR001841 | - | |
Pvu10g0546 | 148 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 19 | 144 | IPR045191 | GO:0061630 | |
Pvu10g0546 | 148 | SUPERFAMILY | RING/U-box | 99 | 146 | - | - | |
Pvu10g0546 | 148 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 141 | IPR001841 | - | |
Pvu10g0546 | 148 | PANTHER | OS04G0185500 PROTEIN | 19 | 144 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu10g0546 | Pvu-Chr10 | 8309408 | 8310062 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu10g0546 | 12 | 145 | C3H Transcription Factor Family | AT2G15530 | 39.286 | 3.37e-29 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu10g0546 | K19041 | - | pvu:PHAVU_010G052600g | 312.768 |