Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0546 ATGCACAATCATCCTCCTAGAGTTCACTCCAACTTTCATGCTCGTAGAGACAACATACATGATCTTTCTTCTATGGCCTTTCTTCCGGAAGTTGTTTCATTCCGTTACCATCATATTCATATGCAATTGGACATTAACAACATGTCACATGAGGATCTTCTTACTTTAGGTCAACGGATTGACAACGTAAAGAGGGGTTCGTCAGAAGAAATTATTGCAAGACAAATGCGGACAAAAACTTATCTACTACCTAATAATTTGGAGGGCTCAACTTCTGAGGAACAAGAAATTAATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGATTGTATAAGGAGATGGTTACAAGAGAAAAATGTTTGTCCCCTGTGCAAATCAAAAGTATTGGTTATTGGATAG 447 0.3714 MHNHPPRVHSNFHARRDNIHDLSSMAFLPEVVSFRYHHIHMQLDINNMSHEDLLTLGQRIDNVKRGSSEEIIARQMRTKTYLLPNNLEGSTSEEQEINLCIICQDEYKNKEEIGILQCGHEYHADCIRRWLQEKNVCPLCKSKVLVIG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0546 148 Pfam Ring finger domain 99 141 IPR001841 -
Pvu10g0546 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Pvu10g0546 148 SMART ring_2 100 140 IPR001841 -
Pvu10g0546 148 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 19 144 IPR045191 GO:0061630
Pvu10g0546 148 SUPERFAMILY RING/U-box 99 146 - -
Pvu10g0546 148 ProSiteProfiles Zinc finger RING-type profile. 100 141 IPR001841 -
Pvu10g0546 148 PANTHER OS04G0185500 PROTEIN 19 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0546 Pvu-Chr10 8309408 8310062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0546 12 145 C3H Transcription Factor Family AT2G15530 39.286 3.37e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0546 K19041 - pvu:PHAVU_010G052600g 312.768