Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0542 ATGGGTGAAAAAGATGATGGGTTGGGGTTAAGGTTGAGTTTGAGATGGGGAGAAAATGATGATAATAACATGAATCAACAACACCCTTTCAACATGCACAAGCCTCCTCAACCTGTTCCAAACCAAAGGACTTCTTTCAATAATTTGTTCCATTTCCATGGAGCTTCTCATGTAACAAATCGGAACTCCGAGCCGCCACCGTTTTTCTTTGGAATAGATGTTAACTTGCCGCCGCCACCAACACCAACACCGTCGGTGGTACCATGCGAAGAGGACAATCTTGTGTCTTCGCAGAACAGCGCAGTATCAAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGAGGGTCGTGTTCGCATGGAAGTGAAGATGAGGATGGCGGAGGGTTCGGTGGTGAAGGCGATGGCGACATGTCAAGGAAGAAACTGAGGTTGTCGAAGGAACAGGCCTTGGTGCTGGAAGAAACATTCAAGGAACACAACACTCTGAATCCGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGACTGTGAATACTTAAAGAGATGTTGTGAGAATCTAACTGAGGAGAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCTCCACAGCTCTACATGCACATGAATCCTCCAACCACTCTTACAATGTGTCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCCTCATCAGCTGCCATGCCTTCTGTGCCACCTCCAGCTAATCACAACCCATTAGGCCCTACCATCCAGCGGCCAGTGCCGGTCAACCCTTGGGCAGCAATGTCAATTCAACGCCCCTGCCGTAATTGA 918 0.4815 MGEKDDGLGLRLSLRWGENDDNNMNQQHPFNMHKPPQPVPNQRTSFNNLFHFHGASHVTNRNSEPPPFFFGIDVNLPPPPTPTPSVVPCEEDNLVSSQNSAVSSISGKRSEREENERGSCSHGSEDEDGGGFGGEGDGDMSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSAAMPSVPPPANHNPLGPTIQRPVPVNPWAAMSIQRPCRN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0542 305 Pfam HD-ZIP protein N terminus 1 113 IPR006712 GO:0005634
Pvu10g0542 305 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Pvu10g0542 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 299 - -
Pvu10g0542 305 CDD homeodomain 142 199 IPR001356 GO:0003677
Pvu10g0542 305 Gene3D - 146 196 - -
Pvu10g0542 305 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Pvu10g0542 305 MobiDBLite consensus disorder prediction 264 286 - -
Pvu10g0542 305 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Pvu10g0542 305 SUPERFAMILY Homeodomain-like 126 199 IPR009057 -
Pvu10g0542 305 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Pvu10g0542 305 PANTHER - 3 299 - -
Pvu10g0542 305 SMART HOX_1 140 202 IPR001356 GO:0003677
Pvu10g0542 305 MobiDBLite consensus disorder prediction 90 106 - -
Pvu10g0542 305 CDD bZIP 191 230 - -
Pvu10g0542 305 MobiDBLite consensus disorder prediction 107 124 - -
Pvu10g0542 305 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355|GO:0043565
Pvu10g0542 305 MobiDBLite consensus disorder prediction 81 141 - -
Pvu10g0542 305 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0542 Pvu-Chr10 8254147 8257046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0542 26 303 Homeobox Transcription Factor Family AT3G60390 58.528 4.33e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu10g0542 HD-ZIP_N 9.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0542 K09338 - gmx:100798480 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0542 10 8254147 8257046 Pvu10g0542 10 8254147 8257046 ECH
Pvu10g0542 10 8254147 8257046 Pvu8g0458 8 3914630 3917765 PCT