Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0528 ATGAACTTCAACACCACTCTTCACTCCCATGATCATGCTCTTCTTCAATCCATTCAACATTTCCTCCTCGACGATACCCAAGACTTAAATGCTCTCGCGGCGGTTTTGGCCTCACCCGACGGCGTTTCACCTCGGCAGAGCGACGGCGGATCCACCTCCACCCTTTTCACCTCCGCCGTTAACTCTCCATCAGCCTCGCTAGGACAGTCAACAACCACCTCCACGGCGGCGCGTGGAGAATATACGGTGGCGCGTGGCGGTAACGCGCCTTACCAGAACTTCAAGGGAGTGAGACGCAGACCTTGGGGGAAGTTTGCGGCTGAGATTAGAGATCCGAAGAGAAACGGCGCCAGAGTTTGGCTTGGGACTTACGAGTCGGCTGAGAGTGCGGCTTTGGCTTATGATCGAGCCGCTTTTGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTAATTGGAAGCCATGAGCCAAGCCATGAGCCAAGCTAA 495 0.5374 MNFNTTLHSHDHALLQSIQHFLLDDTQDLNALAAVLASPDGVSPRQSDGGSTSTLFTSAVNSPSASLGQSTTTSTAARGEYTVARGGNAPYQNFKGVRRRPWGKFAAEIRDPKRNGARVWLGTYESAESAALAYDRAAFEMRGSKAKLNFPHLIGSHEPSHEPS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0528 164 MobiDBLite consensus disorder prediction 39 79 - -
Pvu10g0528 164 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Pvu10g0528 164 PANTHER DNA-BINDING DOMAIN 63 155 IPR044808 GO:0003700|GO:0009873
Pvu10g0528 164 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Pvu10g0528 164 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Pvu10g0528 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 63 155 - -
Pvu10g0528 164 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Pvu10g0528 164 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Pvu10g0528 164 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Pvu10g0528 164 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Pvu10g0528 164 MobiDBLite consensus disorder prediction 44 79 - -
Pvu10g0528 164 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0528 Pvu-Chr10 8082893 8083593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0528 82 159 AP2-EREBP Transcription Factor Family AT2G44840 74.699 7.44e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g0528 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0528 K09286 - gmx:100806359 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0528 10 8082893 8083593 Pvu10g0528 10 8082893 8083593 ECH