Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0527 ATGGCCACCACAACAACAACATCATGCGATTTCTCATCGTTGGAATCAATTCAACACTATCTCCTTGAGCTTGAACCAGATTCCAACACCCTCATGAACGTTGTTTACAGCCCCCAAGTTTTCTACTCTCCAATGTGCAAGCCGTTCCCGAGCCCTACTTTGCAGGGTGTCCACGATGCAGAGGTGAAAGCGCGTGAGGGTCACGCGCCGCCGGTGTGGAAGCGTTTCCGTGGTGTGAGGAGGAGGCCGTGGGGGAAGTTCGCGGCAGAGATAAGGGATCCAAAGAAGAACGGTGCGAGAATTTGGCTTGGAACTTATGAAAGTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCTGCATTTGAGATGCGTGGTAACAAAGCTAAGCTGAATTTTCCTCATCTTATTGACTCTGATATGGCTATGAAGCCCGTTAGAATAAGCAAAACTTCGAAAGAAAGCACGTTGGAATCTTATTCATCATTGTCACCATCTTCAGATGCCGAAGAAGGGTCAAAGAAAAGGAAGAACTTGGTTGAGTTGTTGAACAGGTTGGCCAAGAACAGAAGGCAAGTGCAGGTGTTTCAAACCAGTTTGCACTCAAAAACTTTCTCTGTTCATCAACACTTTAATTAG 636 0.4607 MATTTTTSCDFSSLESIQHYLLELEPDSNTLMNVVYSPQVFYSPMCKPFPSPTLQGVHDAEVKAREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKKNGARIWLGTYESEEEAGLAYDKAAFEMRGNKAKLNFPHLIDSDMAMKPVRISKTSKESTLESYSSLSPSSDAEEGSKKRKNLVELLNRLAKNRRQVQVFQTSLHSKTFSVHQHFN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0527 211 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Pvu10g0527 211 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Pvu10g0527 211 MobiDBLite consensus disorder prediction 153 173 - -
Pvu10g0527 211 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Pvu10g0527 211 MobiDBLite consensus disorder prediction 153 167 - -
Pvu10g0527 211 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Pvu10g0527 211 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Pvu10g0527 211 PANTHER DNA-BINDING DOMAIN 4 190 IPR044808 GO:0003700|GO:0009873
Pvu10g0527 211 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Pvu10g0527 211 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 4 190 - -
Pvu10g0527 211 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Pvu10g0527 211 CDD AP2 74 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0527 Pvu-Chr10 8078193 8078828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0527 29 147 AP2-EREBP Transcription Factor Family AT2G44840 58.333 3.96e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu10g0527 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0527 K09286 - gmx:100527194 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0527 10 8078193 8078828 Pvu10g0527 10 8078193 8078828 ECH
Pvu10g0527 10 8078193 8078828 Pvu8g0471 8 4004959 4005582 PCT