Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0526 ATGGCCAATGATTTGTGTTCAGGTGTTGAATCATACGAGCTTGAAAATGTTTCCGACCAAGAAACCTTTTATTCTTCCTCGTACGAGAATCCTATTGCAAACCCTAGCCATGCCCATGATGCCACTCAACTATTTGCATGCATGGTGGAAGCACCTGTGGCAGCGCGTGAGGTGCACGCGCCTCCAAAGTGGAAGCACTTCCGAGGCGTGAGGCGGCGGTCATGGGGGAAGTTTGCGGCGGAGATATGGGATCCAAAGAGAAACGGAAGGGTTTGGCTGGGAACGTATGAGACTGAAGAAGAAGCAGGTTTAGCTTATGATAGGGCTGCTTTCAAGATGAGAGGTAGCAAAGCAAAGTTGAATTTTCCACACTTGATTGGATCCAACGCGCGGCCGGAGAGAGTGATAGCGGCGGCAGTGGCTCCAAAGCCGAACCCGCCGGAGGCTTGTTTGCCTCCTTTGTCTACGGCAGAGGATGGTTCAGAGTCACAAGGGTCAAAGAAGAGGAGAAACCTAGCTGATTTGCTTAATAGGTTAGCTAAGAATAAAAGTCAAAGAATTATTACAAGAAAATTATGA 579 0.4853 MANDLCSGVESYELENVSDQETFYSSSYENPIANPSHAHDATQLFACMVEAPVAAREVHAPPKWKHFRGVRRRSWGKFAAEIWDPKRNGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSNARPERVIAAAVAPKPNPPEACLPPLSTAEDGSESQGSKKRRNLADLLNRLAKNKSQRIITRKL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0526 192 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Pvu10g0526 192 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 31 185 - -
Pvu10g0526 192 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Pvu10g0526 192 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Pvu10g0526 192 PANTHER DNA-BINDING DOMAIN 31 185 IPR044808 GO:0003700|GO:0009873
Pvu10g0526 192 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0526 Pvu-Chr10 8042080 8042795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0526 59 145 AP2-EREBP Transcription Factor Family AT2G44840 66.667 6.66e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu10g0526 AP2 5.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0526 K09286 - gmx:100792115 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0526 10 8042080 8042795 Pvu10g0526 10 8042080 8042795 ECH
Pvu10g0526 10 8042080 8042795 Pvu8g0472 8 4010611 4011156 PCT