Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0525 ATGAACCCTCATGCTTCAAACACCAACGAGAATGTCCTTGATCTCTCTGAGCTACCTGCAACGACGCTGTTCAGCCGTAGCTCCAGCTTCCGGAGCATTTTCTTCGCGGAGAACTGGGCGGAGCTACCGCTGAAGGAGAACGACGCCGACGACATGGTTATCTTCGGCGCTTTGCGTGAGGCCGCAGCCACCACCGGATGGTTCCCGGCAAATGGCAATGGGGTGAGCAATGCAGCAGTTAAAATTGAAAACGAGGGTCAAAGCAGTGACACTAATGCCGCGAGTGGAATTCAGCCGCCTCCGGTGAAAGGGTTGAGCTACCGCGGCGTGCGGAGGAGGCCATGGGGGAAGTACGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGGGAGAGTGTGGCTTGGAACCTATGAAAGTGCTGAGGACGCAGCTTTGGCTTATGATCGAGCTGCATTTAAAATGCATGGCTCCAAAGCAAAGCTCAATTTTCCTCATTTGATTGGTTCGGATGATGCAGAACTAATTAGGGTTACATCAAAGAAACGTTCATTGGAGGTTTTATCATCTAATTTATCGTCGTCGTTGGTGACTGCAAAACGGAGTAAAGATAATTCTTTCGTTGATTCGGAGATGAATGACTTAGATATGTGGTAG 654 0.5 MNPHASNTNENVLDLSELPATTLFSRSSSFRSIFFAENWAELPLKENDADDMVIFGALREAAATTGWFPANGNGVSNAAVKIENEGQSSDTNAASGIQPPPVKGLSYRGVRRRPWGKYAAEIRDAKRNGGRVWLGTYESAEDAALAYDRAAFKMHGSKAKLNFPHLIGSDDAELIRVTSKKRSLEVLSSNLSSSLVTAKRSKDNSFVDSEMNDLDMW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0525 217 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 PANTHER DNA-BINDING DOMAIN 18 194 IPR044808 GO:0003700|GO:0009873
Pvu10g0525 217 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Pvu10g0525 217 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 PRINTS Ethylene responsive element binding protein signature 146 166 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Pvu10g0525 217 CDD AP2 107 166 IPR001471 GO:0003700|GO:0006355
Pvu10g0525 217 PANTHER BNAC04G53270D PROTEIN 18 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0525 Pvu-Chr10 8020695 8021348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0525 23 185 AP2-EREBP Transcription Factor Family AT2G44840 52.147 1.83e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g0525 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0525 K09286 - gmx:100793366 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0525 10 8020695 8021348 Pvu10g0525 10 8020695 8021348 ECH