LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0504	ATGGAAGCTAAGCCTCTTAGGATTGTTCCCTCTTCACGCAACACCTCTGGAGGTGGACCCCAAAAGAAGATTGACATTGGACACGCGATGGAAGGTGGTGGTGGTAGTGTTGTTGACGAGAGAAAGAGGGTTGTTATGGTCAAGAAAGAGAAAGAGAACTCTTCCAACAGTGTTGAGCTTCATCTTGGGGTTGATGCTTCTCATTCTGCGCCATCAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGAGAGCTTCACCACCAAGTTTTCATCTTCAACCACTTGGCCTATAAACTTCCTCCTCCTCAACACCTTGTGGAATTCCCAAGCAACATGTCAGAATACAGTTTCCTGGGTTTTGATCATGGGAGTATGGTGGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCAGTAAGAGTGTAGTGCCTTGTCAAAAGTACTGTGAAAGGCACATGCATAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACAACTCAACTTAACTCGACTTTGGCAACAAAACCTTCTACCAAGTCATCTACCAAATCAGTCTCAAAGACAGTTTTTGAAATTTCAAATCCAAACCTTATTATGGCCATGCAACCTACTGACACACCTTCCAGTACCCCATCAAAGAGCCTCACCATTGACAACTGCTCTTCTATCAGGTCTAAAATTATCCCCAGGGCTGCCGACTACCTCATGGTGTTTTCTTCCGCTGCAGCAGTGTCCCCTGGCTGCACTCTTGCCACTTCTGTTGCCCCTAAGGTGGCGGCAACATTCAGCAGTGTGGCATCTGTAGCTTCGGATAACAAAAGTTGCCTAAAGATGTGCCAGAAAGATAACCAGTCCAAGAGCTGTGTCAGTAACAACACAGGTAATAGAAGTGATGGGAAAGGAAGCATTGTTGGTGATTCTAATAGCGTCTCCACAGGAATAAGCTTCTCCCCAACAAGTGTTCTTCAAGTTTTTGGTAACAACTCTTCTTACCTCAATGACAAAACCAACATAGAACCTGCTGCACCCGATAGGTGTCGGAGAACAGACGGCAAGAAGTGGCAATGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTACTGTGCCACACACATGCACAGAGGTGCTAAAAAGCGTTTTGCAAACCATGAAATAGAAGCAGCAGCAGCTACTACAACTGCTTGTTCTGCCGCTACCAGTGCACGCTTGCCTTACTCTCCAGCCATAACCAACATGCACCAAGCACATTCTGCAATTCCAAGTACAAATCTTTCCATGTCAGTCCCAGCAAGTGCTCCTTTCATACAATGCAATGAGAAAGGCCCCAGTAGCAGTGACACCGATACCACCATCAGTGACACCTTGCAAGAGTGTAGCTATACTTCTTTCTGA	1410	0.4596	MEAKPLRIVPSSRNTSGGGPQKKIDIGHAMEGGGGSVVDERKRVVMVKKEKENSSNSVELHLGVDASHSAPSEINHVITEAQRRELHHQVFIFNHLAYKLPPPQHLVEFPSNMSEYSFLGFDHGSMVDPEPHRCRRTDGKKWRCSKSVVPCQKYCERHMHRGRNRSRKPVETTQLNSTLATKPSTKSSTKSVSKTVFEISNPNLIMAMQPTDTPSSTPSKSLTIDNCSSIRSKIIPRAADYLMVFSSAAAVSPGCTLATSVAPKVAATFSSVASVASDNKSCLKMCQKDNQSKSCVSNNTGNRSDGKGSIVGDSNSVSTGISFSPTSVLQVFGNNSSYLNDKTNIEPAAPDRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRFANHEIEAAAATTTACSAATSARLPYSPAITNMHQAHSAIPSTNLSMSVPASAPFIQCNEKGPSSSDTDTTISDTLQECSYTSF*	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0504	469	MobiDBLite	consensus disorder prediction	292	311	-	-
	Pvu10g0504	469	Pfam	WRC	350	385	IPR014977	-
	Pvu10g0504	469	Pfam	WRC	129	171	IPR014977	-
	Pvu10g0504	469	ProSiteProfiles	QLQ domain profile.	77	112	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Pvu10g0504	469	MobiDBLite	consensus disorder prediction	1	35	-	-
	Pvu10g0504	469	MobiDBLite	consensus disorder prediction	169	193	-	-
	Pvu10g0504	469	MobiDBLite	consensus disorder prediction	162	193	-	-
	Pvu10g0504	469	PANTHER	-	329	428	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
	Pvu10g0504	469	PANTHER	-	48	277	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
	Pvu10g0504	469	PANTHER	GROWTH-REGULATING FACTOR 9	329	428	-	-
	Pvu10g0504	469	PANTHER	GROWTH-REGULATING FACTOR 9	48	277	-	-
	Pvu10g0504	469	ProSiteProfiles	WRC domain profile.	128	172	IPR014977	-
	Pvu10g0504	469	ProSiteProfiles	WRC domain profile.	347	392	IPR014977	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0504	Pvu-Chr10	7529054	7532473	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0504	81	385	GRF Transcription Factor Family	AT2G45480	31.858	9.12e-32	124

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0504	-		-	pvu:PHAVU_010G048400g	887.871