Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0464 ATGCCCCCGAAAACGACGAAGCGTGGGTCCACGTCGAACGCCTCGAAGAGGGGTGGCAGAGGCGGCAGGGGAACCCCCAAGGCTGCGCAGAGCCAGCAGCACCATGACGCTGCGGAAGAGGCGGTGAAGGTCGAGGAGAAACAACCCATTGTTGTTGTTGCCGAGGAGGAGCAACCCAAGGCGGTGGAAGAAGAGAACCCTGTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGTTGTGGTGGTTGAGGATAAAGCTATTGATATGAACCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATCTCGCTAATGGGTTGACTGCGGTTAAAAACAATGAAGAGGAAGTTAAGGAATCAATGGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAATATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGCAATGAAGTAGAGGAAGAGGCTGAAGATAATTTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCATGACGAACTTGAGGGTGAAGAGGAGCATGAACATACTGGTGAGGAGCATGATCACCCAGACTTTGCTGATGTGGATGATGAGGAACATCGAGAAGTTGCGAAGGAGAGGCGCAAGCGAAAGGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTTGTTACAGAGGTCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTCCAAACTGTGGAACAAGCTAAACGAGCTGTAGCAGAACTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGCCAGGACAGTGATACACTCTATTTAGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGCTGAAACATTATGGAGTTACCAATGTTGAGGATTTGACCTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTTCTGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTACCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTAGCCAGGAACATGCCAGCTGCTCGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACATGATGCTGCTGTAAAATGTGCTGATAGTATTACTGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGTCGTGGAAAACACATTAGTCGTGGTGACTATCGTTCTGGTCGAGGATCTGGAATGATGCCAAGGCCTTCATGGAGCCGACCTGCACCTCGGACTTTTACTCGTGGTGCCAGAGGAGTTGGCAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTACCTCCTCCATCTAGATCTTATGATAGGAGACCAGTCGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGTGAGGATATACCGCCTCCGAGAAGTAGAGTTGCTGTAGATTATGGTTCTAGGGTGGCTTCTGAAAGAAGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGTCCTGGCTACTCTGAGCTCCCTAGAAGCACATCTCGGGCTGCACCGAGAAGGGGCTATGTGGATGATGGATATAGCCAAAGATTCGAGAGACCTCCACCTCCACCTCCTCCCCATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGAAACTCTGTCTGGCTCAAAACGTGCTTATGCTGCTATAGATGATGTTCCTCCCCGATATGCTGATACTGGTGCTCGCCAATCCAGAGCTCGATTAGATTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTGGTAGCAGCAGAAGCTCTATGTCTGGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGTTCTTTTAATGCTGGTGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCCCGTGGAAGTGATGTTGGTGGCAGCTCATATTCGTCAGTGTATTCAAGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGCGGATCAGGATCTTATTATTGA 2457 0.4664 MPPKTTKRGSTSNASKRGGRGGRGTPKAAQSQQHHDAAEEAVKVEEKQPIVVVAEEEQPKAVEEENPVVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTAVKNNEEEVKESMDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTGEEHDHPDFADVDDEEHREVAKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFQTVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMPRPSWSRPAPRTFTRGARGVGSRAPPVRPVSVRDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVAVDYGSRVASERRPSYRDYPARGPGPGYSELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREGRPRDYETLSGSKRAYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSSRSSMSGQDSHGMYSSRQGMSYGGSFNAGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0464 818 SUPERFAMILY RNA-binding domain, RBD 314 479 IPR035979 GO:0003676
Pvu10g0464 818 SMART rrm1_1 316 395 IPR000504 GO:0003723
Pvu10g0464 818 SMART rrm1_1 236 309 IPR000504 GO:0003723
Pvu10g0464 818 SMART rrm1_1 413 488 IPR000504 GO:0003723
Pvu10g0464 818 Gene3D - 402 519 IPR012677 -
Pvu10g0464 818 Gene3D - 316 398 IPR012677 -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 494 678 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 1 18 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 734 754 - -
Pvu10g0464 818 CDD RRM_SF 317 384 - -
Pvu10g0464 818 CDD RRM_SF 414 488 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 785 818 - -
Pvu10g0464 818 CDD RRM_SF 237 308 - -
Pvu10g0464 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Pvu10g0464 818 SUPERFAMILY RNA-binding domain, RBD 230 313 IPR035979 GO:0003676
Pvu10g0464 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Pvu10g0464 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 383 IPR000504 GO:0003723
Pvu10g0464 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Pvu10g0464 818 MobiDBLite consensus disorder prediction 129 197 - -
Pvu10g0464 818 PANTHER RNA RECOGNITION MOTIF 1 818 - -
Pvu10g0464 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 818 - -
Pvu10g0464 818 Gene3D - 157 315 IPR012677 -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 785 802 - -
Pvu10g0464 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Pvu10g0464 818 MobiDBLite consensus disorder prediction 1 45 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 731 754 - -
Pvu10g0464 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Pvu10g0464 818 MobiDBLite consensus disorder prediction 586 600 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 198 228 - -
Pvu10g0464 818 MobiDBLite consensus disorder prediction 115 228 - -
Pvu10g0464 818 Coils Coil 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0464 Pvu-Chr10 6752985 6758675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0464 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 3.69e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0464 - - gmx:100779340 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0464 10 6752985 6758675 Pvu10g0464 10 6752985 6758675 ECH
Pvu10g0464 10 6752985 6758675 Pvu8g0499 8 4320303 4326326 PCT