Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0450 ACAATGGATGAAACATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGATGAGTTGCATATGTTCAATGAACACAACATGAACACTCTTGAGGAAGAATTGATGAAGGTGGTGAGTTCAGTGCCTTGTGATTCAGATTTTGCTAACAGCAGCAGCAACAACAATGGTTCATGTTTGGAAAGGAACACACAACATGCGAATTCTAATTCGGAGAAGAACCAAGTAGTTTCATCCTGCAATCTCTCTTTTGAGGATTCCACTGTGGTGTCAAATGTTCCTGATAAATCATTCCATGAAAAGCCTTTGAAGGGAAGAAGCTCTTCTCTGTCGCAACAACACATAATGGCTGAGAGGAAGAGGAGAGAGAAAATCAGCACCTTGCTTGTAGAACTTTCAGCCATGGTTCCTGGTTTGAAAAAGTTGGACAAGTTATCTATCGTAGGCAAAACTGTCGATTATGTGAAGTATCTACAGAATCGTGTAAAAGATTTGCAGGAACAACACAGTAAGATAGAATATGCAGAGTGCTGCAGAAACAACAAATCCAATGTTAACATTTCAGAGAATTCTAACAATGGTTTAGATGATAGACTTACTTTTCCTAAAGTTAATGTAAGTGTTTCAGGTGAAGATGTAATAATCAGAGTTACTTGTGAGAAACGAGAGCACATTGTTACAAAGTTTTTGTCCATGCTTGCATCTCACAATCTCTCCGTAGCTTGTAGCAGTGTTCTGCCATTTGGGACTTCTACCCTAAACATTTCTATCATTGCTAAGGCGCAACATTTCGGCATGGCAATAGATGACCTAGTCAAAAATTTAAGTGAGGATTTATTGAAATTATATAACTTGCAACAATAA 861 0.3786 TMDETWEKWFSDLEMDDELHMFNEHNMNTLEEELMKVVSSVPCDSDFANSSSNNNGSCLERNTQHANSNSEKNQVVSSCNLSFEDSTVVSNVPDKSFHEKPLKGRSSSLSQQHIMAERKRREKISTLLVELSAMVPGLKKLDKLSIVGKTVDYVKYLQNRVKDLQEQHSKIEYAECCRNNKSNVNISENSNNGLDDRLTFPKVNVSVSGEDVIIRVTCEKREHIVTKFLSMLASHNLSVACSSVLPFGTSTLNISIIAKAQHFGMAIDDLVKNLSEDLLKLYNLQQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0450 286 SMART finulus 114 163 IPR011598 GO:0046983
Pvu10g0450 286 PANTHER BHLH TRANSCRIPTION FACTOR 7 284 - -
Pvu10g0450 286 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 284 - -
Pvu10g0450 286 Gene3D - 103 173 IPR036638 GO:0046983
Pvu10g0450 286 Pfam Helix-loop-helix DNA-binding domain 111 158 IPR011598 GO:0046983
Pvu10g0450 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Pvu10g0450 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 170 IPR036638 GO:0046983
Pvu10g0450 286 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0450 Pvu-Chr10 6575815 6578663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0450 105 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 42.781 2.18e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0450 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0450 - - pvu:PHAVU_010G043200g 450.284