Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0449 GATTTTGCTAACAGCAGCAGCAACAACAATGGTTCATGTTTGGAAAGGAACACACAACATGCGAATTCTAATTCGGAGAAGAACCAAGTAGTTTCATCCTGCAATCTCTCTTTTGAGGATTCCACTGTGGTGTCAAATGTTCCTGATAAATCATTCCATGAAAAGCCTTTGAAGGGAAGAAGCTCTTCTCTGTCGCAACAACACATAATGGCTGAGAGGAAGAGGAGAGAGAAAATCAGCACCTTGCTTGTAGAACTTTCAGCCATGGTTCCTGGTTTGAAAAAGTTGGACAAGTTATCTATCATAGGCAAAACTATCGATTATGTGAAGTATCTACAAAATCGTGTAAAAGATTTGCAGGAACAACACAGTAAGATGGAATCTATAGATTGCTGCAGAAACAACAAATCCAATGTTAAAATTTCACAAAATTCTAACAATGGTTTAGATGATAGACTTACTTTTCCCAAAGTTGATGCAAGTGTTTCAGGTAAAGATGTAATAATCAGAGTTACTTGTGAGAAACGAGAGCACATTGTTACGAAGCTATTGTCCATGCTTGCATCTCACAATCTCTCCGTAGTTTGTAGCAGTGTTCTGCCATTTGGGACTTCTACCCTAAACATTTCTATCATTGCTAAGGCGCAACATTTCGGCATGGCAATAGATGACCTAGTCAAAAATTTAAGTGAGGATTTATTGAAATTATATAACTTGCAACAATAA 726 0.3747 DFANSSSNNNGSCLERNTQHANSNSEKNQVVSSCNLSFEDSTVVSNVPDKSFHEKPLKGRSSSLSQQHIMAERKRREKISTLLVELSAMVPGLKKLDKLSIIGKTIDYVKYLQNRVKDLQEQHSKMESIDCCRNNKSNVKISQNSNNGLDDRLTFPKVDASVSGKDVIIRVTCEKREHIVTKLLSMLASHNLSVVCSSVLPFGTSTLNISIIAKAQHFGMAIDDLVKNLSEDLLKLYNLQQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0449 241 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Pvu10g0449 241 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 239 - -
Pvu10g0449 241 MobiDBLite consensus disorder prediction 47 66 - -
Pvu10g0449 241 MobiDBLite consensus disorder prediction 1 27 - -
Pvu10g0449 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 126 IPR036638 GO:0046983
Pvu10g0449 241 Gene3D - 58 128 IPR036638 GO:0046983
Pvu10g0449 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Pvu10g0449 241 SMART finulus 69 118 IPR011598 GO:0046983
Pvu10g0449 241 PANTHER BHLH TRANSCRIPTION FACTOR 21 239 - -
Pvu10g0449 241 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0449 Pvu-Chr10 6556700 6560256 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0449 60 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 43.915 3.55e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0449 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0449 - - pvu:PHAVU_010G043200g 471.855