Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0444 ATGGAAGAAGACTCATGGGAGAGTTGGATTTCTTCCTTGGAGATGGGTGATGAGGACAATTTCATTGGCCATTCTCACATCAAATCACTTGATGAAGATAAGTTTGTACTTGAGCCATTGAATTTCTCATTTCACAACTCTTCTACTAATAATAATGATAATGATAATAATAGTAAGAAAGTTTTTTCCATGGGAAGTAGTTGCTTGTCCTATGAAGAAGATGCAAGCTTTGATGAGAGGCATGGGAAAATGCTGAAGAGTAATAGCTCAAGCTCCATCATTTCTCAAGATGTTGTGGCTTACAAGAATGCTGCTTCTTCTTCTTCTTCTTCTTCAGCACCATCCTCATCTTCTTCCTTCATTTTGTCCTTTGAAAACTCAACCATGAAACCTTCTTCTCTCCATCATAGACCTAATGATGATGATGATCATGGTGATTTGCATAGGTATTTTGGTGGGGATGCCCTATGTTCTTCAGTTCTGAGCTCAGAGAGTGAGCATGTCATCACCAAACCAAAGGCCAAACAAGGTGACAACAAGAAGTATAGAAGCTCATCTGAGATTCAAGATCACATCATGACTGAGAGAAGAAGAAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCTTATATACTTAGGGAAGCAATGATATACATGAAACAACTTGAAGAGAGAGTGATTGAGCTAGAAAATGAGAACAAGAGGAAGAACACAGATTCAAGAATACTGATAAAGAAATATTCCCAAGTGTGTTCAAGAGAAGAAGAAGGGACATCATGTGATGAAACAAAGTCTCATAATATATCAACTCCTCCACTACCTCAGGTTGAAGCAAGAGTGTTGGAAAAAGAGGTTCTGATTGGAATTCACTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCATCATCTCTCTCTTGCTAGCAGCAGTGTCTTGCCCTTTGGAACTTCCACTCTCAAAGTTACAATCATTGCCCAGATGGAAGAAAAATACTGCATGACAGTGAATAATCTTGTAAAAAGTCTGAAGCAAGCTCTCTTGAAAATCACATGA 1110 0.3892 MEEDSWESWISSLEMGDEDNFIGHSHIKSLDEDKFVLEPLNFSFHNSSTNNNDNDNNSKKVFSMGSSCLSYEEDASFDERHGKMLKSNSSSSIISQDVVAYKNAASSSSSSSAPSSSSSFILSFENSTMKPSSLHHRPNDDDDHGDLHRYFGGDALCSSVLSSESEHVITKPKAKQGDNKKYRSSSEIQDHIMTERRRRQELTERFIALSATIPGLKKTDKAYILREAMIYMKQLEERVIELENENKRKNTDSRILIKKYSQVCSREEEGTSCDETKSHNISTPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMEEKYCMTVNNLVKSLKQALLKIT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0444 369 SMART finulus 192 241 IPR011598 GO:0046983
Pvu10g0444 369 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 367 - -
Pvu10g0444 369 MobiDBLite consensus disorder prediction 167 186 - -
Pvu10g0444 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Pvu10g0444 369 Coils Coil 225 252 - -
Pvu10g0444 369 Gene3D - 185 256 IPR036638 GO:0046983
Pvu10g0444 369 PANTHER BHLH TRANSCRIPTION FACTOR 5 367 - -
Pvu10g0444 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 256 IPR036638 GO:0046983
Pvu10g0444 369 Pfam Helix-loop-helix DNA-binding domain 190 236 IPR011598 GO:0046983
Pvu10g0444 369 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0444 Pvu-Chr10 6441162 6445367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0444 183 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.324 8.63e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0444 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0444 - - vra:106773267 424.091