Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0435 ATGGCTTCTCCGCCACCGTTAACGCTAAACGTCGTCGGATCAGACACGGACACCGCGTTCCCAACCGTCGCTTCCAGTTCTCTAACGCCTCCGTCACCGCGCCGTTCGTCTCCGTTACAGAGCCTCAGTCCCAGCATTCTCATTATCGTTACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTTTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCACCGCCGCGCCCTCCGCATCCGCCTCTGCCACGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTGCACTCCTCGTCGGCCGCCGCCGCCTCTGTCATCGACACGCTGCCGCTCTTCACGTTCTCCTCCGTCACGCGCCGCTCCGCCTCCGCTGCCGCCGACTGCGCGGTCTGCCTCTCTAAGTTCCACCACCACGACCTCCTCCGACTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTCTCGTGTCCGCTCTGCCGCTCTCCCATCGCCGCCGCGGAATCCGACCTCGCGAAAATCCTCCGCCCGCCGTCCTCAGCCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGTGGCGCCGAAGGCGCCCCAGCCGCTCGCAGCGATTCACGCTCCCGGTCCTATTCCATTGGTTCGTTCGAGTATTTGGTGGACGATGACTCCGAGGTTGCGTTCAGCCACGCCCGCCGGAGAAGCGAGGACGATGCGAAAGAGTTTCCGGCGGCGGAGGCTCAGACTCCGGCGAATCATAACGAGGCGAGTCTGGCCGGCGAGGTTGCCGGCGTTAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCCGCTTCCATCTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGCGGTGGCGGGAGCAGTCGGCGAAGCGACGTCGTTCCAGTGGTTGCTGCGGAATACGACTTGGAAGGGAACCGAATTGGCGAAGAAATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1077 0.6295 MASPPPLTLNVVGSDTDTAFPTVASSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSTAAPSASASATPIFSSSRRISPEIVHSSSAAAASVIDTLPLFTFSSVTRRSASAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDLAKILRPPSSAAGSSDSFRLELGNISRRGAEGAPAARSDSRSRSYSIGSFEYLVDDDSEVAFSHARRRSEDDAKEFPAAEAQTPANHNEASLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0435 358 Pfam Ring finger domain 138 181 IPR001841 -
Pvu10g0435 358 SMART ring_2 139 180 IPR001841 -
Pvu10g0435 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 326 - -
Pvu10g0435 358 MobiDBLite consensus disorder prediction 254 273 - -
Pvu10g0435 358 SUPERFAMILY RING/U-box 128 186 - -
Pvu10g0435 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 12 326 - -
Pvu10g0435 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 190 IPR013083 -
Pvu10g0435 358 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pvu10g0435 358 CDD mRING-H2-C3H2C2D_ZSWM2 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0435 Pvu-Chr10 6288833 6289909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0435 25 210 C3H Transcription Factor Family AT4G28890 33.333 8.87e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0435 K10663 - gmx:100817751 441.039