Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0421 ATGCTTTTGGAGAACTTCTACAACATATTTGGTGCCACAGAGCTGAAAAGTGAGTTTTGGAATTCATGGCAGCCATTGGAATCACCATGCTTGGTGGAGCATGTGATTTTACCTGTGGAACTTGGGTTCTTTGTGATCTTGTTAGTCCAAATCCTAAGAAAATATGTGAACCTAATCAGCAAGGACTCAGATGGTGCCACAAAGTTGATGCATCCAACAGCAATCAAATATGGTTTTTCTTACAAAGTCAGCATTGTCTGCAACACATTGTTGCTGGGTGTTCATGCATCACTGCTGCTACTGATGCTCAATCATGAGACTCAATGTACCTCAAAGCTTCAGGCCTTCACATCAGAGATAGTTCAAGTGTTATCATGGGCAACCAGTGTTATAGCAATATGCAAGATATCAAAATCAAGCACACATTTCCCTTGGATTCTGAGGGCTTGGTGGCTTTGCAATTTCATTGTGTGTGTGATAAGCACAGGGCTTCATGTCCATTTCAGTGTCACCAACAATGGTGAGGTGAGTATAAGAGAATATGCAGATTTCCTTGGTTTGCTTGCTTCAACATGTCTTTTGGTTATTTCCACAAGAGGGAAGACAGGCACTGTGATGCTTGCCACAAATGGTGCAGCCGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCAGAGTGTCGAAAGGAATCTCCATATGGAAAAGCCACGCTTCTCCAACTCATTAACTTCTCTTGGCTCAACCCCTTGTTTGCAATAGGGTACAAGAAACCCCTTGAACAGAATGACATTCCTGATGTTGACATCAAAGACTCTGCTGAGTTTCTAACCTGCTCCTTTGATGAGAGCCTTAGGCAAGTCAAAGAGAAAGATGGCACTGCAAACCCCTCTATCTACAAGGCAATCTACTTGTTTGCTAGGAAGAAAGCAGCACTGAATGCATTGTTTGCAGTGGTAAATGCTTCAGCATCGTATGTTGGTCCTTACTTGATAACAGACTTTGTGGATTTCTTGGGAGAGAAGGAAACGCGTGGCTTGAATAGTGGATACCTTCTGTCACTGGCTTTTCTCTGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGAGCCAGGCAATTAGGCCTTCGCCTCAGAGCAGCTTTGATATCGCATATATATCAGAAGGGCTTACATCTGTCGAATAGATCGCGCCAGACTCACACAGGTGGGGAGATAATGAACTTCATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTGAATGTAATATGGATGCTGCCAATACAAATTTCTTTAGCAGTGTTCGTTCTGCATACAAATCTAGGACTAGGTTCATTGGCTGCACTAGCTGCTACATTGGGAGTGATGACTTTGAACATACCTCTGACAAAGATACAGAAAAGATACCAAGCCAAGATCATGGATGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTCCTCAGAAACATGAAGACTTTGAAGCTTCAAGCATGGGACAGTCAATTTTCTCAAAGGATAGAAGCACTCAGGAATGTAGAGTACAGTTGGCTAACAAAGTCCTTGAGGCAAGCAGCATTTTCTGCCTTTATCTTTTGGGGATCACCTACATTCATTTCTGTGATAACTTTCTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGGGTGTTGTCTGCATTTGCCACTTTCCGAATGCTGCAGGATCCTATATTCAGCCTACCTGATTTGCTCAATGTCATTGCTCAAGGAAAAGTTTCTGTTGATAGGATCGCTTCCTTCCTCCGTGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGAGAAAACAGAATTTGACGTAGTTATTGAGAAAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAATTGAAAGTTAAGAGGGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTTCTATCAGGCATTTTGGGAGAAATATATAAAAAGTCTGGAACAGTTAGGATCAGTGGAACAAAAGCTTATGTTCCACAATCAGCATGGATATTGACTGGAAACATAAGGGACAACATCACCTTTGGAAAAGAGTACAATGGTGATAAGTATGAGAAAACTGTTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATTGGTGAAAGAGGGATCAACATGAGTGGGGGACAGAAGCAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGACATATACCTTTTTGATGACCCTTTCAGTGCTGTTGATGCTCATACTGGTACTCACCTCTTTAAGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTATAATTTTTGTTACACATCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAACACAGGCTGGAAAATTTGATGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCACAGCAAAGCTCTAGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTTTCAATTCAATATCTGAAGAAGGGGAATCCAACTTCAACTCCAGGTCAAGTCTTCAACTAGAGAACACACAGCATGACAAAGTGCAAGATAACCCTCCAGAGGACAAAGGAAATGATGGAAAGTTGGTGCAAGAGGAGGAAAGAGAAACAGGTAGCATATCAAAAGAAGTTTACTGGACTTATTTGACCACTGTCAAAGGAGGAATGTTTATCCCTCTCATTCTCTTGGCACAATCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGATGCCAAGCCTATATTTGACATGAATTTCATATTACTTATCTATATGGCACTCTCAGTTGCTGGTTCATTCTGTGTTCTGCTGCGAGCCATGATGGTTTTAAATGCTGGACTTTGGACAGCACAGTCACTTTTCACGAAGATGTTGCATAGTGTGTTCCGCGCCCCCATGGCATTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGGCTTCCACAGATCAAAGTGTGTTAGACATGGAAATGGCAAACAAAGTAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGAACTATTGCCGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTATACCCCTACAGCTAGAGAACTGGCTCGCTTAGCACAGATACAGATCACTCCAATTCTCCACCATTTTTCAGAATCTTTGGCAGGAGCAGCATCAATACGAGCTTTTGATCAAGAAGGCCGTTTCATATACACCAATCTTATCCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTATCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTAGTGACCCTACCTGAAGAAATAATCAACCCAAGTATTGCCGGACTAGCAGTAACATATGGGATCAATCTGAATGTGCTGCAAGCATCAGTCATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTACACAAATATAACAAGTGAAGCACCTCTTGTGATTGAAGACAGCAGGCCCCCAAGCAATTGGCCAGAAACTGGAACAATATGTTTCAAGAATTTACAGATACGTTATGCCGAACATCTACCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGGAGGAAGAAAGTTGGTGTTGTTGGGCGTACTGGGAGTGGAAAATCAACCCTCATACAAGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATAATTGACAATGTGGATATATGCAAGATTGGTCTCCATGACTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACTGTTAGAGGAAACCTGGACCCTCTTCAGCATTACTCTGACATTCAAGTGTGGGAGGCTCTAGACAAATGTCAACTGGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTAGATTCCCCTGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTTCTGAAAAGAAGCAGCATACTAGTACTAGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGAGTGTTGCAGAACATCATAAGTCAAGAGTTCAAAGATAGAACTGTTGTCACAATAGCTCATAGAATCCACACAGTTATTGATAGCGATTTGGTTTTGGTGCTCAGTGATGGGAGAATTGCTGAGTATGATGAACCATCAAGGTTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTTATAAAGGAGTATTCTGGAAGATCACATAGCTTCAACAGCTTGGCAACACAACATGTCCAAAGCAGGGAACAGTTATAG 4545 0.4185 MLLENFYNIFGATELKSEFWNSWQPLESPCLVEHVILPVELGFFVILLVQILRKYVNLISKDSDGATKLMHPTAIKYGFSYKVSIVCNTLLLGVHASLLLLMLNHETQCTSKLQAFTSEIVQVLSWATSVIAICKISKSSTHFPWILRAWWLCNFIVCVISTGLHVHFSVTNNGEVSIREYADFLGLLASTCLLVISTRGKTGTVMLATNGAAEPLLGEKTEKHSECRKESPYGKATLLQLINFSWLNPLFAIGYKKPLEQNDIPDVDIKDSAEFLTCSFDESLRQVKEKDGTANPSIYKAIYLFARKKAALNALFAVVNASASYVGPYLITDFVDFLGEKETRGLNSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSNRSRQTHTGGEIMNFMSVDVQRITDFVWYVNVIWMLPIQISLAVFVLHTNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMDAKDNRMKATSEVLRNMKTLKLQAWDSQFSQRIEALRNVEYSWLTKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIENVAKEKTEFDVVIEKGRFSWDPDSTTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKKSGTVRISGTKAYVPQSAWILTGNIRDNITFGKEYNGDKYEKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRITQAGKFDDLLKQNIGFEVLVGAHSKALESIVVAENSSRTSFNSISEEGESNFNSRSSLQLENTQHDKVQDNPPEDKGNDGKLVQEEERETGSISKEVYWTYLTTVKGGMFIPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTAQSLFTKMLHSVFRAPMAFFDSTPAGRILNRASTDQSVLDMEMANKVGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLILVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVTLPEEIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDSRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQHYSDIQVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQNIISQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSRLLEREDSFFFKLIKEYSGRSHSFNSLATQHVQSREQL* 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0421 1514 CDD ABCC_MRP_domain1 626 826 - -
Pvu10g0421 1514 MobiDBLite consensus disorder prediction 869 915 - -
Pvu10g0421 1514 Gene3D ABC transporter type 1, transmembrane domain 283 610 IPR036640 GO:0005524|GO:0016021
Pvu10g0421 1514 Gene3D ABC transporter type 1, transmembrane domain 902 1238 IPR036640 GO:0005524|GO:0016021
Pvu10g0421 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1485 IPR027417 -
Pvu10g0421 1514 PANTHER - 84 1502 - -
Pvu10g0421 1514 CDD ABC_6TM_ABCC_D2 938 1232 IPR044726 GO:0140359
Pvu10g0421 1514 Coils Coil 473 493 - -
Pvu10g0421 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1220 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g0421 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g0421 1514 SMART AAA_5 653 826 IPR003593 -
Pvu10g0421 1514 SMART AAA_5 1283 1475 IPR003593 -
Pvu10g0421 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 84 1502 - -
Pvu10g0421 1514 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Pvu10g0421 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 842 IPR027417 -
Pvu10g0421 1514 MobiDBLite consensus disorder prediction 869 893 - -
Pvu10g0421 1514 SUPERFAMILY ABC transporter transmembrane region 926 1239 IPR036640 GO:0005524|GO:0016021
Pvu10g0421 1514 SUPERFAMILY ABC transporter transmembrane region 307 608 IPR036640 GO:0005524|GO:0016021
Pvu10g0421 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 849 IPR003439 GO:0005524
Pvu10g0421 1514 Gene3D - 621 852 IPR027417 -
Pvu10g0421 1514 MobiDBLite consensus disorder prediction 894 915 - -
Pvu10g0421 1514 CDD ABCC_MRP_domain2 1255 1475 - -
Pvu10g0421 1514 Pfam ABC transporter 1274 1422 IPR003439 GO:0005524
Pvu10g0421 1514 Pfam ABC transporter 645 778 IPR003439 GO:0005524
Pvu10g0421 1514 CDD ABC_6TM_ABCC_D1 312 600 IPR044746 GO:0140359
Pvu10g0421 1514 Gene3D - 1240 1492 IPR027417 -
Pvu10g0421 1514 Pfam ABC transporter transmembrane region 950 1184 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g0421 1514 Pfam ABC transporter transmembrane region 313 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g0421 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1491 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0421 Pvu-Chr10 5873509 5885268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0421 614 872 Calmodulin-binding Proteins AT2G36910 28.223 1.10e-20 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0421 - - gmx:100809749 2729.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0421 10 5873509 5885268 Pvu8g1467 8 25478657 25484687 PCT