Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0383 GATGAGTGTTTGAAGATGGCTGATACTTCGTTTTTTTTCACTAATTTTCCTGATCATTTCTCTGAGAGAGATCTATGGAAGGTGTTTCAAAGGTGGGGAAGAGTCCTGGATGTTTTCATTGCCAGAAAGCTTAACGCAAGGTGTCGAAGGTTTGGGTTTGTTAGGTTCCGTGTGACTGACGTTCTTTCCCTGGAAAGAAAATTGGATGCGATATGGATTGGTACGTGGAAGTTACAGGTGAATCTCCCTAAGTATCGAAGGGATGACGCATCAAGGGTTGGAAAGAAGAGAGGGGTGGTTAAGAGGGAAGTTTGGACTCCGAAGGGGCAGCAGAAGTTGTCCTTTGCTCAAATGGTGGCGGGTGATGTGGTTCTGGATGTTCGTGGTGATGCTGATGCGGGGGGTTCAGGTAAGAGCGCTTGCGGTTCACAGGAGGAGGGATACGATTTCCAGTTTCCAGTAGACAAGGAGTCGTCTTCCTGGTTGGAGGGTTGCTTCTTCGGGCGTCTCAAGGAATCTCCACGTTTGCAGTCGATTAAGGAAAGCTTTATTTTGGGAGGTTTTAGCCTGGTGAGGTTAAGATTTCTCGGGGAGAAGTATGTATTGTTGTCCTGCGACGAAGGAGAAGCGCTTGGAAAAGTTCTGGAAGATAACAAAGCTTGGTTAGATAGTTTGTTTTCAGAGTTGTTCCCTTGGAAAGATTCATTTGGTTGTAGAGGCATTCCTTTACAGTTGTGGTGTAACCATTGTTTTGTCAGTATTGGATCTATGGTCGGGGAGTTTGTGGAAGTTGATGTTTCAAATGAGAAGAGGGAGTTGTTAGAGTACATCCGTGTTAGGGTGAAGATACCGGTAGCTAGTATGGTTAGTCTGGTGAAAGATATTCGTATTAATGGAACATGGTGTAGGGTGTCATTCGAAGAGGAGGCTAGTGTGCAGGCATTGGACCCAAAAGATTATTGTGGTAGGTGGGGCGGCGGTCGCTCTGAGGTAGATACAGAGGCAAGCTCAGAAGAGGGAGATGATGGAGAAAGAAGTGGAGAAGATGTATCGGTTCATTGCCAGGAGGCACAGCGTGGCTTCGGTATGGACCAACCTGGGGAAGCTGGGGGTGTTGGATCCCTTGAGGAATCAAGAGCCGTAACAATTAATGCAATTACTGCTGGTGTTTTTGGTTATTCCCCACGTCAACATATTGGATTATTTGCAGGAGCAGAAAAAGAAAGGTGGGTTGGGATAGAAACGGAGCATCGTAAGGAGAGTCCATGTGGCGTCGAATTGGAAAGGGTTGGGAATAGGAATGTTGGGTTTGCTGATTCCCTAGAAGAACCATGTGATGCAGCATTTAAAGATGGCCTTTCTCCGTGCCAACAACTTGGTTTAACGGAAGTAATTAATGAAGCTAGGAAAGGATGTGAAATGATTACCATTGCAAATGAAGTTTGCCATGTGGAGGACTATGGTAGCATGCCTTTAATGGATGCTCATGAAGAAGTGAATGTGGACTTCTTATTTAATGGGGAGCACTCACAGCGGGACCCACGGTGTGAGGCAAATGAGGAACGGGTTCTGGAGGTTGAAAATATTCTTGGTCACGTGGAGAGGAGTGGAATGGATTGGTGGTCTGGAGGGGTCGTGGAGGGGGTTGGTGGGGTAGGAGCAGGAGGGTTATTGGTTTCTCCAGCTGAGTTGCAAGGACATGGGATGGGCGGCGTTAGCGGGGAATTCGCAGGCGATCCTCGCTGCCACCTTCATTGTGGTGAGGGTCAAGTTGCGGATGTCAGTTATGAAGCAGCGAAGAAGGTTGGGAGGAGGAGAAAAAAGAATTTACGGTTGCGTAGCGGTCCG 1848 0.474 DECLKMADTSFFFTNFPDHFSERDLWKVFQRWGRVLDVFIARKLNARCRRFGFVRFRVTDVLSLERKLDAIWIGTWKLQVNLPKYRRDDASRVGKKRGVVKREVWTPKGQQKLSFAQMVAGDVVLDVRGDADAGGSGKSACGSQEEGYDFQFPVDKESSSWLEGCFFGRLKESPRLQSIKESFILGGFSLVRLRFLGEKYVLLSCDEGEALGKVLEDNKAWLDSLFSELFPWKDSFGCRGIPLQLWCNHCFVSIGSMVGEFVEVDVSNEKRELLEYIRVRVKIPVASMVSLVKDIRINGTWCRVSFEEEASVQALDPKDYCGRWGGGRSEVDTEASSEEGDDGERSGEDVSVHCQEAQRGFGMDQPGEAGGVGSLEESRAVTINAITAGVFGYSPRQHIGLFAGAEKERWVGIETEHRKESPCGVELERVGNRNVGFADSLEEPCDAAFKDGLSPCQQLGLTEVINEARKGCEMITIANEVCHVEDYGSMPLMDAHEEVNVDFLFNGEHSQRDPRCEANEERVLEVENILGHVERSGMDWWSGGVVEGVGGVGAGGLLVSPAELQGHGMGGVSGEFAGDPRCHLHCGEGQVADVSYEAAKKVGRRRKKNLRLRSGP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0383 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 57 IPR000504 GO:0003723
Pvu10g0383 616 SUPERFAMILY RNA-binding domain, RBD 10 93 IPR035979 GO:0003676
Pvu10g0383 616 MobiDBLite consensus disorder prediction 326 350 - -
Pvu10g0383 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 85 IPR000504 GO:0003723
Pvu10g0383 616 PANTHER RNA RECOGNITION MOTIF 10 379 - -
Pvu10g0383 616 CDD RRM_SF 12 81 - -
Pvu10g0383 616 Gene3D - 5 113 IPR012677 -
Pvu10g0383 616 Pfam Domain of unknown function (DUF4283) 192 281 IPR025558 -
Pvu10g0383 616 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 10 379 - -
Pvu10g0383 616 SMART rrm1_1 10 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0383 Pvu-Chr10 5397915 5400127 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0383 - - pvu:PHAVU_010G036700g 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0383 10 5397915 5400127 Pvu8g0528 8 4601738 4606123 PCT