LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0334	ATGGCTTCCCCTTTGATTCCCTTTCTCTTCCTCTCAATCATTCTGTTACCCTTTCAACTCATCACTGTTGTAGCCCAAACAAAAACCAACTTAGCTATTGGTGATTCTTATACTGCAGCAAAAAGCACCACCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTGCCTTTGGTTTCCTCCCACTTGAGGACTCTCCTGATCATTTCATACTTTGCATTTGGTATGCCAAGATTCAAGGCAACACCATTGTTTGGTTTGCCAATAGGGAAAAGCCTGCACCAAAGGACTCAAAGGTGGAGCTTACTGCTAATGATGGGTTGGTTCTCACTGCCCCAAATGGTGACAAGTTATGGAATACTGGAACCAGTGTTACAGTTTCTAGGGGTTTGTTTAATGACACTGGAAACTTTGTGCTTCAGGATGGTGACTCCAACAGTGCTTGGGAGAGTTTCAAGGATTATAGAAACACCTTGCTGCCCTATCAGACTCTGCAAAGGGGCCAAAAGCTTTCTTCTATGCTTAGGGAGAATGATTTCAACAGGGGCAGGTTTGAGCTATTTTTCCAAAATGATGGTAATCTTGTGATGCACTCTTTGAATTTACCATCTGGGTATTCTAATGAAAACTACTATGAAACTGGAACCATTGAGTCCAACACTTCTAGTGCTGGGACACAATTGGTGTTTGATAGCTCAGGAGATATGTATATTTTGAGAGCGAACAATGAAAGGTATAATTTGTCAGAAGAGGGTGTTGGAGTTTCCACCACTCAGTTTTACCTTAGAGCAACTCTTGATTTTTATGGGGTGTTCACACTCTATCGACATCCTAAGGGTTCTTCTGGCAGTGGAGGTTGGACCCCAGTGTGGTCTTATCCAGATAATATCTGTAAGAATTATCTTGCTGCTGCAAGTAGTGGTGTTTGTGGATATAATAGCATATGCAGTTTAAGAGATGATAAGAGACCAACTTGTCAGTGTCCAAAATGGTACTCCTTGGCTGACCCTAGTGATCCCTATGGTAGTTGCAAACCAGATTTTGTACAAGAATGTTTTGAAGGTGATCTTAGTAAAAGAAAGGATCTATATGAGTTTGAAGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATGAGCTTCAAAGACCCTTTAATGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTATGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATGCCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAGGACAACTCCTCCTTGATTACTCCTCTAATCACTGTGAAGAACAATAGGAATACTTTGATTTTGGTTCTGTCAGTGCTTTTTGGTACTTCTGCTTTTCTCAATCTCATATTGGTTTGTGCAATCTGCATGAGCACTTGCTATGTTTTCAAGTACAAGAAGAGGCTTAGAAGACATGGCAAAAGTGGCACTACTGTGGGAACCAACTTGCGTTGCTTCACTTATGAGGAACTTGAAGAGGCCACTGATGGCTTTGGCAAAGTGCTAGGGAAGGGAGCTTTTGGCGTTGTATATGAAGGCGTCGTCAACATAGGTTCTGTTACTCGTGTGGCGGTGAAAAGATTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATATCATTGGACTCACACACCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGACTGACTCAGAAAGGTTACTTGTTTATGAGTACATGGGCAATGGCACTTTAGCAAGTCTTCTTTTTAATGTCGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCATCTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCATCACACAGATCATCCACTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATTTCAGACTTTGGATTGGCCAAGCTTTTGAACATGAATCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGATGGTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTAGAATTTGATGAAGAAGATGAATCCAGAGCAATCCTAAGTGAATGGGCTTATGACTGCTACTCTGAAGGTTCTCTTCATACCTTGGTTGAGGGTGATAAGGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTGGTTTTAGACCAACCATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGGAGGTGCCACCATGTCCCTCACAAGTTAGTATTCAATATTCCCTAAACTAA	2439	0.4162	MASPLIPFLFLSIILLPFQLITVVAQTKTNLAIGDSYTAAKSTTPWLVSSPSGDFAFGFLPLEDSPDHFILCIWYAKIQGNTIVWFANREKPAPKDSKVELTANDGLVLTAPNGDKLWNTGTSVTVSRGLFNDTGNFVLQDGDSNSAWESFKDYRNTLLPYQTLQRGQKLSSMLRENDFNRGRFELFFQNDGNLVMHSLNLPSGYSNENYYETGTIESNTSSAGTQLVFDSSGDMYILRANNERYNLSEEGVGVSTTQFYLRATLDFYGVFTLYRHPKGSSGSGGWTPVWSYPDNICKNYLAAASSGVCGYNSICSLRDDKRPTCQCPKWYSLADPSDPYGSCKPDFVQECFEGDLSKRKDLYEFEVLTDTDWPLSDYELQRPFNEDQCKQSCMEDCMCYVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFMKVRKDNSSLITPLITVKNNRNTLILVLSVLFGTSAFLNLILVCAICMSTCYVFKYKKRLRRHGKSGTTVGTNLRCFTYEELEEATDGFGKVLGKGAFGVVYEGVVNIGSVTRVAVKRLNTFLLEEVQKEFKNELNIIGLTHHKNLVRLLGFCETDSERLLVYEYMGNGTLASLLFNVEKPSWKLRLQIASGVARGLLYLHEECITQIIHCDIKPQNILLDDYYVARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGMVLLEIVSCRKSVEFDEEDESRAILSEWAYDCYSEGSLHTLVEGDKEALDDMKTVEKLVMIALWCVQEDPGFRPTMRNVTQMLEGVVEVEVPPCPSQVSIQYSLN*	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0334	812	SUPERFAMILY	alpha-D-mannose-specific plant lectins	69	215	IPR036426	-
	Pvu10g0334	812	Pfam	D-mannose binding lectin	82	167	IPR001480	-
	Pvu10g0334	812	PIRSF	SRK	1	811	IPR024171	GO:0004674
	Pvu10g0334	812	Gene3D	-	24	152	IPR036426	-
	Pvu10g0334	812	SUPERFAMILY	Protein kinase-like (PK-like)	502	791	IPR011009	-
	Pvu10g0334	812	Gene3D	Phosphorylase Kinase; domain 1	494	597	-	-
	Pvu10g0334	812	ProSiteProfiles	Protein kinase domain profile.	519	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0334	812	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	640	652	IPR008271	GO:0004672\|GO:0006468
	Pvu10g0334	812	CDD	B_lectin	47	151	IPR001480	-
	Pvu10g0334	812	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	15	807	-	-
	Pvu10g0334	812	Gene3D	Transferase(Phosphotransferase) domain 1	598	798	-	-
	Pvu10g0334	812	Gene3D	-	153	281	IPR036426	-
	Pvu10g0334	812	Pfam	Protein tyrosine and serine/threonine kinase	521	790	IPR001245	GO:0004672\|GO:0006468
	Pvu10g0334	812	ProSiteProfiles	Bulb-type lectin domain profile.	38	152	IPR001480	-
	Pvu10g0334	812	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	15	807	-	-
	Pvu10g0334	812	SMART	serkin_6	519	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu10g0334	812	CDD	STKc_IRAK	525	792	-	-
	Pvu10g0334	812	ProSitePatterns	Protein kinases ATP-binding region signature.	525	549	IPR017441	GO:0005524
	Pvu10g0334	812	SMART	blect_4	36	155	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0334	Pvu-Chr10	4689083	4691820	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0334	505	792	Receptor kinase-like Gene Family	AT1G60800	41.497	9.80e-69	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Pvu10g0334		PK_Tyr_Ser-Thr	1.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0334	-		-	vra:106773297	1469.52