Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0314 ATGGGGCCAAACGCTGCGGCGGCGAAACAAGCGGAGAAGCTTCGTATTAACGGCAATACTTACTTCAAGAAAGACCGTTTTGGTGCTGCCATCGATGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGCCCACTATATGTTGGGGCTCGCATTGCTTCAGAGAAAAGAATCTGCCAAGGGAATAAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGGGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATTATCGTCCAAACGATCATGGGAATTGCAGAGTTTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTCGAATTCTCCCAAAGGGAAGGATTTGTAGATGATCCCACTACTGCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTATTTATGTTGTAGAATCACACTCGACATTTTTCATGATCCTGTAATCACCCCAAGTGGGCTTACATATGAAAGAGCAGTGATTCTTGAACACCTTCAGAAGGTGGGTAAATTCGACCCTATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCAGTTCAGGCATTCTTGGACAAACATGGTTGGGCTTACAAGGTAGACTAA 831 0.4609 MGPNAAAAKQAEKLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSAHYMLGLALLQRKESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERLSSKRSWELQSLKEACESALKEKHFLEFSQREGFVDDPTTAHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0314 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 275 IPR045200 GO:0000209|GO:0061630
Pvu10g0314 276 SMART Ubox_2 202 265 IPR003613 GO:0004842|GO:0016567
Pvu10g0314 276 CDD RING-Ubox_CHIP 199 265 IPR045202 -
Pvu10g0314 276 PANTHER OS08G0113300 PROTEIN 5 275 - -
Pvu10g0314 276 SUPERFAMILY TPR-like 10 109 IPR011990 GO:0005515
Pvu10g0314 276 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Pvu10g0314 276 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Pvu10g0314 276 Gene3D Tetratricopeptide repeat domain 3 163 IPR011990 GO:0005515
Pvu10g0314 276 Pfam U-box domain 199 271 IPR003613 GO:0004842|GO:0016567
Pvu10g0314 276 SMART tpr_5 11 44 IPR019734 GO:0005515
Pvu10g0314 276 SMART tpr_5 79 110 IPR019734 GO:0005515
Pvu10g0314 276 SMART tpr_5 45 78 IPR019734 GO:0005515
Pvu10g0314 276 SUPERFAMILY RING/U-box 193 273 - -
Pvu10g0314 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 275 IPR013083 -
Pvu10g0314 276 ProSiteProfiles U-box domain profile. 198 272 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0314 Pvu-Chr10 4383724 4394180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0314 4 275 U-box Gene Family AT3G07370 68.978 7.26e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0314 K09561 - gmx:100796519 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1389 8 21315093 21321109 Pvu10g0314 10 4383724 4394180 PCT