Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0313 ATGGAGTTCGCCTCTTCTTCTTCTTCATCATCATCCTTCTTAAACTCAGAACCCCAGTTCAGATACGATGTGTTCATCAACTTCTGGGGAGAAGACATCGGTAGAAAGTTGGTTTCTCATCTCCATTCTGCCCTTTTACAAGCTCAAGTCAAAACTTTCATCAAGGAGGGGAATCTGCAGGAGGGAATGGAGCTGGAAGAACACATGCGAGAAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAATCATACACTGAATCTACCTGCTGTCTTCTTCAGCTTGAAAAAATCATTGGATGCAACGAAATTTTTGGACAAATAGTTGTGCCCGTATTTTACGAGATTGACCTATTGGACGTACGAAAAGCGTTGGAAGAAGCTGCACACAAAAGGTATTCAGGAGAACGACTGAAATTTCCATTGTCCAGGCGGAGCTATGAACTCAACAGACCTGTAGGTATGAGTGGTTTGGATGTCAGAGATTTCAGGCATGATGCTGAACTTGTTGAGCGAATTGTTAGCCGCGTTCAGACATTGCTGGACTATAAAGACTTGTCTATTACCCAATTTCCTGTTGGATTAGAGTGGCACGTGGAAAAGGTGATTGGATGTATTGAAAATCATTCCACCAGAGTCTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACTACCATAGCCAAAGCCATCTATAATCGAATTTATCGTTCATTCATCGGTAAGAGTTTTATAAATCTTAGACAAGTTTGTGATCAAGAATACGACTGTGATTTGCAAGAAAATGTTCCTTTTGATCTCCTAAAATCCTACCTCCTAAATCCCAACTACAAGAAGATAAGCGTTGCGATGAGAACTATAATCCAGGATGAACTTTATCGAAGAAAGTGGCTGATTGTGCTTGATCAAGTTGATAAAGTGAGAGAGTTTGGCCTATTAGAAAATCTCTGCGAGAGGCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAGCTAGAGATATTCGTTTACTGAACCGACTCAAAGTTGATTATGTTTATAAAATGGATGATGTTATGAAGAAAAAAGAGCCCCGTAAGCCTTTTAATTGGCATGCCTTATGGGGAAGCAAAACCAAGAAAAGGCTTGAATGA 1146 0.4031 MEFASSSSSSSSFLNSEPQFRYDVFINFWGEDIGRKLVSHLHSALLQAQVKTFIKEGNLQEGMELEEHMREIAASKIAIIVFSKSYTESTCCLLQLEKIIGCNEIFGQIVVPVFYEIDLLDVRKALEEAAHKRYSGERLKFPLSRRSYELNRPVGMSGLDVRDFRHDAELVERIVSRVQTLLDYKDLSITQFPVGLEWHVEKVIGCIENHSTRVCMIGIWGMGGSGKTTIAKAIYNRIYRSFIGKSFINLRQVCDQEYDCDLQENVPFDLLKSYLLNPNYKKISVAMRTIIQDELYRRKWLIVLDQVDKVREFGLLENLCERREWFGQGTVIIITARDIRLLNRLKVDYVYKMDDVMKKKEPRKPFNWHALWGSKTKKRLE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0313 381 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 129 IPR035897 -
Pvu10g0313 381 Gene3D - 182 350 IPR027417 -
Pvu10g0313 381 PRINTS Disease resistance protein signature 216 231 - -
Pvu10g0313 381 PRINTS Disease resistance protein signature 294 308 - -
Pvu10g0313 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 371 IPR027417 -
Pvu10g0313 381 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 371 IPR044974 GO:0006952
Pvu10g0313 381 SMART till_3 21 162 IPR000157 GO:0007165
Pvu10g0313 381 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 24 371 - -
Pvu10g0313 381 Pfam NB-ARC domain 198 348 IPR002182 GO:0043531
Pvu10g0313 381 Pfam TIR domain 22 178 IPR000157 GO:0007165
Pvu10g0313 381 Gene3D - 15 181 IPR035897 -
Pvu10g0313 381 ProSiteProfiles TIR domain profile. 20 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0313 Pvu-Chr10 4380448 4382284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0313 15 353 WRKY Transcription Factor Family AT4G12020 25.714 3.13e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0313 - - pvu:PHAVU_010G028400g 475.322